Pairwise Alignments

Query, 418 a.a., Prophage integrase IntA from Xanthobacter sp. DMC5

Subject, 413 a.a., CP4-57 prophage; integrase (NCBI) from Escherichia coli BW25113

 Score =  139 bits (351), Expect = 1e-37
 Identities = 124/404 (30%), Positives = 191/404 (47%), Gaps = 25/404 (6%)

Query: 1   MAREMNRLTARTVASLKDPG---RYPDGGNLYLQIGPTGSKAWLFMFKRD--GKRREMGL 55
           MAR+   LT   + + K      +  DG  L L I  +GSK W F + R    +R +   
Sbjct: 1   MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSF 60

Query: 56  GSLNDVTLAAARLKADEARRIVADGGDPFAVREAALAVRKEVEAAPTFGAFADALITKLA 115
           G+   V+L+ AR    E++ ++A   DP   ++  +   +E +   TF   A+       
Sbjct: 61  GAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTN-TFLLVAERWWNVKK 119

Query: 116 HGFRNEKHVAQWQMTLGPTYCTAIRDMKIADITAVDILKVLEPIW-QDKNETASRLRGRI 174
                +     W+ +L      AI D+ I +I A  ++K ++P+  +   ET  RL  RI
Sbjct: 120 TSVTEDYADDIWR-SLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRI 178

Query: 175 ERVLDAAKVEGLRSGENPAQWKGNLQHRLSKRQKLQRGHHAALPYAEVPAFIVALR-ARQ 233
             V+  A+  GL           N+     K QK       ++   ++P  +  +R A  
Sbjct: 179 NEVMIYAQNTGLIDAVPSV----NIGKAFEKPQKKNM---PSIRPDQLPQLMHTMRTASI 231

Query: 234 AIAARAL-EFAILTAARSGEVLGATWAEIDFKAAVWTVPATRMKAGREHRVPLSDAAVSV 292
           +++ R L  + +LT  R  E   A W EIDF A+ W +PA RMK  R+H VPLSD A+++
Sbjct: 232 SMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAI 291

Query: 293 LREAEPHRRGDDPETAFVFPG-LRPMRPLSTMAMEMLLRRQ--KQVFTVHGFRSSFRDWA 349
           L   +P   G +    F+FP  ++P +P+++  +   L+R     V   HG R S    A
Sbjct: 292 LEMMKPLSGGRE----FIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLR-SIASTA 346

Query: 350 AEETSFPREIAEAALAHVVGDATERAYRRGDALEKRRDMMTAWA 393
             E  FP ++ EAALAHV  +   RAY R D LE+RR MM  WA
Sbjct: 347 LNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWA 390