Pairwise Alignments

Query, 1136 a.a., Vitamin B12 transporter BtuB from Xanthobacter sp. DMC5

Subject, 811 a.a., ligand-gated channel from Pseudomonas simiae WCS417

 Score = 90.5 bits (223), Expect = 5e-22
 Identities = 209/882 (23%), Positives = 333/882 (37%), Gaps = 175/882 (19%)

Query: 23  ARLGAVKASRAPARMLAGALMGATGLGAALLSMPGVAKAQVAREVTFNIPAGPLSGALAA 82
           ARLG    S+A  R L   L+ +    A  L + G  +AQ   E+  +IPA  L  AL  
Sbjct: 3   ARLGLSPLSKALTRALNINLLPSALALAVSLPVAGYVQAQ---EIELDIPAQALGSALQE 59

Query: 83  FGRQSGVQITYAPELAVGKSSPGVTGTVSLSAAMGRILQETGLSHAFVGPNTVAITGTAT 142
           FGRQ+ +Q+ Y+P    GK+S  + G +    A+  +L  T  +H+  G    A+T TA 
Sbjct: 60  FGRQANLQVLYSPTDVAGKNSTAIKGKLDPQQAINTLLAGTSTTHSLSGN---ALTVTAA 116

Query: 143 GAFA--------------------DGTHVLDTIEVTSASPVDRPFETPGTTNFISGEELE 182
           GA A                     G++   TI  T+      P ETP +   I+ + +E
Sbjct: 117 GASAGLELSPTQVTGNVLGNITEGSGSYTPGTI-ATATRLTLTPRETPQSITVITRQHIE 175

Query: 183 RFPGLTAGSIFQGTPGVISGSSNNGAAIDPNIRGLQGMNRVATTIDGSQQSSSSYRGYAG 242
            F       + + TPG+   + +     D      +G +  +   DG     S+ R    
Sbjct: 176 DFGLNNVDDVMRHTPGITVSAYDT----DRTNYYSRGFSVNSFQYDG---IPSTVRNVGY 228

Query: 243 VSSRTFVDPDLISGITVTKGPDGAVGGAIGGIIAMDTLGIT-DILKPGDTYGVRARMGLN 301
            +  T  D  +   + V KG  G + GA        +LG T ++++   T   +  + L 
Sbjct: 229 SAGNTLSDMAIYDRVEVLKGATGLLNGA-------GSLGATINLIRKKPTSEFKGHVQL- 280

Query: 302 SNGTTPLIGAKAADFGHSDADNWSGSFAAAVTTPNVD-------LVAAYVQRQSGNYFAG 354
                   GA + D   S+ D         V+ P  D        VAAY  ++S      
Sbjct: 281 --------GAGSWDNYRSEVD---------VSGPLTDSGNVRGRAVAAYQDKKS------ 317

Query: 355 TQGDLTTENYLGKQVRLSNYYYGQQVYNTSEDVASGLLKATVRPADGHELQLSY---LYY 411
                    ++    R +  YYG   ++ S D    +L       D      S+      
Sbjct: 318 ---------FMDHYSRKTETYYGITEFDLSPDT---MLTVGFDYQDNIPKGSSWSGSFPL 365

Query: 412 GNDFGEVTPSAIAVGTNVTWQIPLSSVALNQATA---RYHYKPDG---NELVDFKVNAYG 465
            N  G +     +     TW    SS   N  TA     H   DG      +D K+N+Y 
Sbjct: 366 VNSNGSINKMPRSYNNGTTW----SSWEQNTRTAFAMLEHDMGDGWVTKFQLDHKINSYH 421

Query: 466 SNIDEVTVFTLAKD-TTKIKQQTQNAGISAENTSRFLLASTPISLRYGGTYALEVA---- 520
           +++  +     A D T +I  Q        ++TS  L A+ P SL +G  + L V     
Sbjct: 422 ADLGSIQFVQPAADGTAEINGQKYTG--ETKSTSADLYATGPFSL-FGREHELVVGGSIG 478

Query: 521 ----------RPNFP-INPEDFSGW----AVPA---------DADREIGTLFARAKLEPL 556
                      P +P  N  DF  W    A P          D  R+ G  +   +L  +
Sbjct: 479 TSRWQGKGYWSPEWPGGNKVDFYNWNGHIAKPIYGPVQQYIDDTIRQTG-YYMTTRLNVM 537

Query: 557 SWLTLEAGLEYLTYETTFNGTSFEYIGPEFTSYSG--SGVSPTVSATVTPLPGWQLYAQY 614
             L +  G     Y  T    S++  G  F  Y+G    ++  +SA          YA Y
Sbjct: 538 DDLHVILGGRVANYHVTGINPSYKETG-RFVPYAGVVYDLNDNISA----------YASY 586

Query: 615 STGIRPPSTREVSQTRNDQRFNPTLQAENAVNYEVGTNLLKSDVFLPGDKLRAKVAYFD- 673
           +   +P       ++    R    L+ +   NYE+G   LK D FL G +L A VAYF+ 
Sbjct: 587 TDIFQP------QESTYKDRNQKLLEPDEGQNYELG---LKGD-FLDG-RLNASVAYFEV 635

Query: 674 NTTNNYIGRQFSINMSLFNYDYVRFKGAE-FSGGYDA------GPAFVDFGFNYYTDFEA 726
           + TN  I      N +    +Y  FKG++  + GY+A       P +   G  Y      
Sbjct: 636 HETNRAISDDAYNNQTPAPSNYA-FKGSKAVTKGYEAEVSGELSPGWQVQG-GYTHKIVR 693

Query: 727 CLLNGQCMSYTPQADYLANQVPPRFTASVTAGMRFWDDRVTLGGRLTYMGQRLAPLVADP 786
              + +  ++ P+     +QV    T  +   +    D+ T+GG L +  +    +   P
Sbjct: 694 DDNDKKISTFEPE-----HQVNLNTTYKLKGDL----DQFTIGGGLRWQSKGWYEIYNSP 744

Query: 787 SYFSTIAKNWAPYTIVDLFGQWKINDTLTFDVSVQNLLDAYY 828
              +      A Y +VDL  ++++   L+  V+  N+ D  Y
Sbjct: 745 LNTNQDITQKA-YWLVDLMTRYQVTKNLSATVNFNNIFDKSY 785