Pairwise Alignments

Query, 167 a.a., putative RNA polymerase sigma factor FecI from Xanthobacter sp. DMC5

Subject, 168 a.a., putative RNA polymerase sigma-70 factor from Pseudomonas putida KT2440

 Score = 57.4 bits (137), Expect = 1e-13
 Identities = 48/159 (30%), Positives = 76/159 (47%), Gaps = 15/159 (9%)

Query: 5   LQRLFLRHAREINRFLRRRGHSAETAADLTQDTFVRLLAAAPRGN---GDNPSAYLHQVA 61
           +Q L+  H   +  +L R+  +A  AADL  DTFVRLL+   +GN   G+ P A L  +A
Sbjct: 12  VQTLYTEHHGWLQGWLGRKLGNACDAADLAHDTFVRLLSR--QGNPYFGNEPRALLTHIA 69

Query: 62  RNLSVDLYRRERLVEFVDLPATDFQGLADF----APGPEAVTYDRQRLAIVARALSELPE 117
           + L VD +RR+      D+     + +A       P PE      + L  +   L ++P 
Sbjct: 70  KGLVVDRWRRQ------DVERAYLEAIAHLPQPEVPSPETRWLILETLYRIDAMLRDMPA 123

Query: 118 QTRTAFEMHRLGERTMQEIATDLHLSVSRTWALIRRAYL 156
           + R  F + +L   T  +IA  L +S+      +R A+L
Sbjct: 124 RVRQVFLLSQLDGLTYAQIAEQLQVSLITIKRDMRTAFL 162