Pairwise Alignments

Query, 167 a.a., putative RNA polymerase sigma factor FecI from Xanthobacter sp. DMC5

Subject, 161 a.a., ECF subfamily RNA polymerase sigma-24 factor from Pseudomonas putida KT2440

 Score = 80.1 bits (196), Expect = 2e-20
 Identities = 58/155 (37%), Positives = 79/155 (50%), Gaps = 3/155 (1%)

Query: 9   FLRHAREINRFLRRRGHSAETAADLTQDTFVRLLAAAPRGNGDNPSAYLHQVARNLSVDL 68
           FL H  E+     R+  S + A DLT D FVR+L   PR   + P AYLHQ ARN++VD 
Sbjct: 7   FLDHYHELIGTWTRKLRSRQQAEDLTHDAFVRVLET-PREQVEQPRAYLHQAARNIAVDG 65

Query: 69  YRRERLVEFVDLPATDFQGLADFAPGPEAVTYDRQRLAIVARALSELPEQTRTAFEMHRL 128
           +RRE   + ++  A  F+  A  +  PEA  +  +    V RAL+ELP   R  F   +L
Sbjct: 66  FRREDRRQALEREA--FEEGATGSGDPEAYVHALELADSVERALAELPLNCRQVFIWQKL 123

Query: 129 GERTMQEIATDLHLSVSRTWALIRRAYLHLRASLN 163
              T  EIA  + LS +     + R   HLR  L+
Sbjct: 124 EGLTQAEIAERMGLSKNMVEKYMIRTLRHLREHLD 158