Pairwise Alignments

Query, 342 a.a., Multidrug resistance protein MdtA from Xanthobacter sp. DMC5

Subject, 366 a.a., RND transporter from Pseudomonas simiae WCS417

 Score = 84.0 bits (206), Expect = 6e-21
 Identities = 90/357 (25%), Positives = 151/357 (42%), Gaps = 33/357 (9%)

Query: 1   MSLRFIPPAAAFAVAMAALLPASGIARAADFTVRSVEVPE-------LKGVFGEVKSRTV 53
           M   F+P   A  V++  LL   G   AA  T+R   V +       +    GEV++R  
Sbjct: 1   MRSTFLP--FALPVSLVFLLAGCGHEEAAQTTIRPAMVVQPQPSSQSMDSYPGEVRARYE 58

Query: 54  VPARARIGGTVRSVTVSEGDKVKEGDEIALVVDDKNALTLNAADARIKELTSQLDNAKIE 113
                RIGG V    V EG++VK    +A +      L L A  A++    + L   + E
Sbjct: 59  PDLAFRIGGKVSKRLVEEGERVKANQALAELDPQDVRLQLEATRAQVAGAEANLSLVRAE 118

Query: 114 LDRAQQLVARGVASQARLDTAKTQFDVATNQVTASQADRAVILQRAREGAVLAPADGRVL 173
            DR + L+ R + S+++ D ++  +     ++   +A+  V   +A    + AP DG V 
Sbjct: 119 RDRYKTLMDRQMVSRSQYDNSENLYRAGVARLKQIKAEFDVASNQAGYAVLRAPQDGVVA 178

Query: 174 TVPVTPGSVVLAGDEIARVAS-GPYSLRLSLPERHAASIREGGTVRI------GERGISQ 226
              V  G VV AG  +  +A+ G   + +SLPE+     + G  V +       +R   +
Sbjct: 179 KRVVEVGQVVSAGQTVFTLATDGEREVLISLPEQGFGRFKIGQPVSVELWSQPDQRFTGR 238

Query: 227 DKAGTPATARPGRIVKVYPEISAGRVMADVEVDGLGSYFVNERTLVWVEIGRRSVLAVPA 286
            +  +PA     R        + G+V A+          + +   V++++     L+VP 
Sbjct: 239 IRELSPAADPKSRTFAARVAFTGGKVPAE----------LGQSARVFIQVDGDIPLSVPL 288

Query: 287 ALIRTQHGIDYVTLATAGGPLD-VPVILGERFAGDDGER-VEILTGLKDGDVISAAG 341
           + +  ++G  YV        L   PV +G       GE+ V +L GL   D + AAG
Sbjct: 289 SALSAENGASYVWRVQPDNTLKRTPVRIGA-----FGEKTVPVLEGLSPTDWVIAAG 340