Pairwise Alignments

Query, 342 a.a., Multidrug resistance protein MdtA from Xanthobacter sp. DMC5

Subject, 366 a.a., RND membrane fusion protein from Pseudomonas putida KT2440

 Score = 74.3 bits (181), Expect = 4e-18
 Identities = 77/307 (25%), Positives = 125/307 (40%), Gaps = 28/307 (9%)

Query: 46  GEVKSRTVVPARARIGGTVRSVTVSEGDKVKEGDEIALVVDDKNALTLNAADARIKELTS 105
           GEV++R       RIGG V    V EG +VK    +A +      L L A  A++    +
Sbjct: 51  GEVRARFEPELAFRIGGKVSKRLVEEGQRVKADQPLAELDPQDVRLQLEANRAQLAAAEA 110

Query: 106 QLDNAKIELDRAQQLVARGVASQARLDTAKTQFDVATNQVTASQADRAVILQRAREGAVL 165
            L   + E DR Q+L+ R + S ++ D A+  +     ++  ++A+  V   +A    + 
Sbjct: 111 NLALVRAERDRYQKLLERQMVSHSQYDNAENLYRAGLARLKQAKAEFDVAGNQAEYAVLR 170

Query: 166 APADGRVLTVPVTPGSVVLAGDEIARVAS-GPYSLRLSLPERHAASIREGGTVRIGERGI 224
           AP  G +    V  G VV AG  +  +A+ G   + + LPE+  A    G       + +
Sbjct: 171 APQAGVIAKRQVEVGQVVAAGQTVFTLAADGEREVAIGLPEQQFARFAVG-------QPV 223

Query: 225 SQDKAGTPATARPGRIVKVYPEISAGRVMADVEVDGLGSYFVNERTLVWVEIGRRS---- 280
           S +    P     GRI ++ P        AD       +        V  E+G+ +    
Sbjct: 224 SVELWSHPQARFQGRIRELSP-------AADPRSRTFAARIAFTTAAVPAELGQSARVFI 276

Query: 281 ------VLAVPAALIRTQHGIDYVTLATAGGPLDVPVILGERFAGDDGERVEILTGLKDG 334
                  LAVP + +  ++G  YV        L+   +   R      + V +L GL  G
Sbjct: 277 AKDGLIPLAVPLSAVTAENGQAYVWRVNKESRLERATV---RLGAYGSDSVPVLEGLDPG 333

Query: 335 DVISAAG 341
           D + AAG
Sbjct: 334 DWVVAAG 340