Pairwise Alignments

Query, 645 a.a., Acetoin catabolism regulatory protein from Xanthobacter sp. DMC5

Subject, 636 a.a., Sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

 Score =  357 bits (915), Expect = e-102
 Identities = 248/618 (40%), Positives = 324/618 (52%), Gaps = 46/618 (7%)

Query: 42  SWTRCAERGLP-VGGRLKAEPLTQG-ELSIRRERYEALRRRCRPELEALHLSASAAGGIV 99
           SW R    GL  + G      L QG +L +  ER   L     PEL+ L ++     GIV
Sbjct: 41  SWRRSLGHGLDCLQGEQVGLGLEQGHDLRLLLERNRLLIDAVTPELDYL-VARQGKAGIV 99

Query: 100 ILTDPTGLVLDTVGSADFADRAAQVALRPGVSWSEADSGTNAIGTALIERRGIEVRGAEH 159
           IL D    VL   G      R     L PG  WSE+  GTNAIGTA++E R   +   EH
Sbjct: 100 ILGDAQANVLAIEGQKHVLQREGLRDLHPGSCWSESLRGTNAIGTAVVEGRPTLINCGEH 159

Query: 160 YAEPHGILTCAAAPIHDPFGELVGLLDLS--GPAAVPHHHALALVELAVGQVEHRLFEGA 217
           Y +     +C + P+ DP GE++G+LD++  G  A P   +L+ + LA G +E RLF   
Sbjct: 160 YLDRLSPFSCTSVPLRDPRGEVIGVLDITREGVMAQPQD-SLSTLMLAAGNIESRLFGLC 218

Query: 218 FPGRDVVRFHADPSFLGTAREGVLVFE-DHRLVAANRPALSLLGLGWDALGARRFSELFE 276
            P + V+ FH+ P +L +A  G+L    D  ++AAN  A  LL +    L  RR ++L  
Sbjct: 219 HPDQLVLAFHSRPQYLNSAWHGLLALSLDGEVLAANDGACQLLQVPRHELIGRRSTDL-- 276

Query: 277 GSLGRPGDARRARTPNGPVMLRLERQAPAPVRMAAVPA---VAPA-----PAPAPAGPSF 328
             LG    A  AR   G V      +     R   +P    V P+     PA +   P+ 
Sbjct: 277 --LGERSPAFIARLWQGGVSSVQTAKGEFYFRALQLPRHGRVTPSTPSSKPALSKQSPAL 334

Query: 329 DSET--EQALGRAIRL----MNAGVPVLIQGETGSGKEVFARQIHARGPRADRTFAAVNC 382
           D+    +Q L R +R+    +  G+PVL+ GETG+GKEV AR +H   PRAD+ F AVNC
Sbjct: 335 DALAGGDQRLARNLRMARQGLGNGLPVLLLGETGTGKEVVARALHQASPRADKPFVAVNC 394

Query: 383 AALPEGLIESELFGYEDGAFTGARRAGFKGLFREADGGVLFLDEIGDMPLGLQSRLLRVL 442
           AA+PEGLIESELFGY +GAFTG+RR G  G   +A GG LFLDEIGDMPL LQ+RLLRVL
Sbjct: 395 AAIPEGLIESELFGYREGAFTGSRRGGMVGRLMQAHGGTLFLDEIGDMPLALQARLLRVL 454

Query: 443 QEREVTPLGGGKAVKVDFALVCASHRDLKMLVEQGSFRADLYFRIAQYTVTLPPLRSLAD 502
           QER V PLG G    +D AL+CA+HRDLK LV++  FR DL++R+   ++ LP LR   D
Sbjct: 455 QERRVAPLGAGDEQDIDVALICATHRDLKRLVQEQHFREDLFYRVNGVSLRLPALRERDD 514

Query: 503 REALVERLWRDMAGPGADAPLLSPACREALARHTWPGNFRQLTGVLKVLLALAEPGETVG 562
             A+++ L   +    A    L PA    L    WPGN RQL  V++  LA+ E GE V 
Sbjct: 515 LAAIIQGL---LDKADARGVTLDPALTALLEGFDWPGNIRQLEMVVRTALAMREDGEQVL 571

Query: 563 PEALPADISAADLRSPAQPAAASTLPASQAGDPAPGLSGDLGSVTRAAMDAALKECDGNI 622
                 D    +L S A P                  SG L       +  AL    GN+
Sbjct: 572 TLDHLTDCLLDELASSAAP------------------SGSLKDSELEQIRGALARHQGNV 613

Query: 623 SRAARRLGIHRSTLHRHL 640
           S AA  LGI R+TL+R L
Sbjct: 614 SAAAAALGISRATLYRKL 631