Pairwise Alignments

Query, 1172 a.a., RecBCD enzyme subunit RecB from Xanthobacter sp. DMC5

Subject, 669 a.a., helicase a single-stranded DNA dependent ATPase from Pseudomonas putida KT2440

 Score = 53.9 bits (128), Expect = 4e-11
 Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 18/138 (13%)

Query: 363 YEAEKAARGLLDFDDLITKAAALLAEQPTFVQFKLDQGIDHILVDEAQDTSPEQWKVVEG 422
           Y+    A   +DFDDLI +   L  E P  ++ +    + ++LVDE QDT+  Q+ +V+ 
Sbjct: 171 YQRTLKAFNAVDFDDLILQPVKLFQEHPEVLE-RWQNRVRYLLVDEYQDTNASQYLLVKM 229

Query: 423 LTSDFFSGEGARAGVTRTIFVVGDEKQSIFSFQGADPRAFGAMRSTFERKVGAEGFRRVE 482
           L            G+     VVGD+ QSI++++GA P     ++  +         + V 
Sbjct: 230 LI-----------GMRNQFTVVGDDDQSIYAWRGARPENLMLLKEDY------PSLKIVM 272

Query: 483 LPHSFRSAPGVLEAVDAI 500
           L  ++RS   +L   + +
Sbjct: 273 LEQNYRSTSRILRCANVL 290



 Score = 37.7 bits (86), Expect = 3e-06
 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 1/66 (1%)

Query: 16 RRQSEASHPAVSAWVSANAGSGKTHVLARRVIRLLL-AGTPPGRILCLTYTKAAAANMAN 74
          R+Q    +      V A AGSGKT V+ R++  L+   G     I+ +T+T  AA  M  
Sbjct: 7  RQQEARDYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNKAAREMKE 66

Query: 75 RVLAIL 80
          RV  +L
Sbjct: 67 RVATLL 72



 Score = 37.0 bits (84), Expect = 5e-06
 Identities = 37/146 (25%), Positives = 53/146 (36%), Gaps = 40/146 (27%)

Query: 773 ETKRDMESGRDEVRVMTAHGAKGLEAPLVILADTVDMPRPRIAGGLLTLPGEGVPVLAPR 832
           E +++ E   + V++MT H +KGLE P V +    +   P                    
Sbjct: 541 ERQQEEEENAEGVQMMTLHASKGLEFPYVFIMGMEEEILPH------------------- 581

Query: 833 KAEDPEVLAAARATAAARELEEYRRLFYVALTRAEDALVICGAETR---------APARD 883
                      R++  A  +EE RRL YV +TRA   L    A  R          P+R 
Sbjct: 582 -----------RSSIEADTIEEERRLAYVGITRARQTLAFTFAAKRKQYGEIIDCTPSRF 630

Query: 884 KPHARPEG-CWYDLARAALEPDADEG 908
                P+   W  L  A +E  A  G
Sbjct: 631 LDELPPDDLAWEGLDDAPVEVKAARG 656