Pairwise Alignments

Query, 1172 a.a., RecBCD enzyme subunit RecB from Xanthobacter sp. DMC5

Subject, 1180 a.a., exonuclease V (RecBCD complex), beta subunit from Escherichia coli BL21

 Score = 92.4 bits (228), Expect = 2e-22
 Identities = 135/534 (25%), Positives = 223/534 (41%), Gaps = 81/534 (15%)

Query: 357 AEACRRYEAEKAARGLLDFDDLITKA-AALLAEQPTFVQFKLDQGIDHILVDEAQDTSPE 415
           AE       EK  RG L FDD++++  +AL +E    +   +       ++DE QDT P+
Sbjct: 333 AEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQ 392

Query: 416 QWKVVEGLTSDFFSGEGARAGVTRTIFVVGDEKQSIFSFQGADPRAFGAMRSTFERKVGA 475
           Q+++   +                 + ++GD KQ+I++F+GAD   +   RS        
Sbjct: 393 QYRIFRRIWHH---------QPETALLLIGDPKQAIYAFRGADIFTYMKARS-------- 435

Query: 476 EGFRRVELPHSFRSAPGVLEAVDAIF-KSEVAHAGLTLDGVGPVHAAIRADAPALVEIWP 534
           E      L  ++RSAPG++ +V+ +F +++ A     +  + PV +A +  A   V    
Sbjct: 436 EVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFI-PVKSAGKNQALRFV---- 490

Query: 535 TTVPEPHPEPDNWRRPLDEVPSDDPVSRL----AARIAGFIQAG-IANGLAIPSRNGRPM 589
               E  P    W    +     D  S +    AA+I  ++QAG     L +   + RP+
Sbjct: 491 -FKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPV 549

Query: 590 RAGDVLVLVRRRGRVFEAVIRALKELKDPRVQVAGADRLVVPEHIAALDLMALGDALLSP 649
           RA D+ VLVR R    + V  AL  L+ P V ++  D   V E + A +++ L  A+++P
Sbjct: 550 RASDISVLVRSRQEAAQ-VRDALTLLEIPSVYLSNRDS--VFETLEAQEMLWLLQAVMTP 606

Query: 650 HDDLSLASVLKSPLFGFTDDDLMALCPQRKGTLASVLATSDDTRHRAAAARLAGWK--GE 707
             + +L S L + + G    D+  L              +D+           G++    
Sbjct: 607 ERENTLRSALATSMMGLNALDIETL-------------NNDEHAWDVVVEEFDGYRQIWR 653

Query: 708 AEGLRPF--------DFYGRVLGRDGGRRAM-----LARLGPEAADVLDEFMALAR--TY 752
             G+ P         +    +L   GG R +     ++ L  EA   L+   AL R  + 
Sbjct: 654 KRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQ 713

Query: 753 EGAEPASLAGFLAFLRRGGAETKRDMESGRDEVRVMTAHGAKGLEAPLVILADTVDMPRP 812
              EP S A          +  +  +ES +  V+++T H +KGLE PLV L    +    
Sbjct: 714 HILEPDSNA----------SSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNF--- 760

Query: 813 RIAGGLLTLPGEGVPVLAPRKAEDPEVLAAARATAAARELEEYRRLFYVALTRA 866
           R+              +    A  PE +  A A   A +L    RL YVALTR+
Sbjct: 761 RVQEQAFYHDRHSFEAVLDLNAA-PESVDLAEAERLAEDL----RLLYVALTRS 809



 Score = 39.7 bits (91), Expect = 1e-06
 Identities = 38/127 (29%), Positives = 62/127 (48%), Gaps = 14/127 (11%)

Query: 30  VSANAGSGKTHVLARRVIRLLL-----AGTP----PGRILCLTYTKAAAANMANRVLAIL 80
           + A+AG+GKT  +A   +RLLL     A  P       +L +T+T+AA A +  R+ + +
Sbjct: 21  IEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNI 80

Query: 81  G--RWARMDDAVLDAAIAETVGEAPDDALRARARRLFAAALETPGGLKIQTIHAFCGGLL 138
              R A + +   D  + E + E  DD  +A+A +    A        + TIH FC  +L
Sbjct: 81  HELRIACLRETT-DNPLYERLLEEIDD--KAQAAQWLLLAERQMDEAAVFTIHGFCQRML 137

Query: 139 HRFPFEA 145
           +   FE+
Sbjct: 138 NLNAFES 144