Pairwise Alignments

Query, 1172 a.a., RecBCD enzyme subunit RecB from Xanthobacter sp. DMC5

Subject, 1311 a.a., Exodeoxyribonuclease V beta chain from Alteromonas macleodii MIT1002

 Score = 73.9 bits (180), Expect = 8e-17
 Identities = 127/534 (23%), Positives = 219/534 (41%), Gaps = 69/534 (12%)

Query: 362 RYEAEKAARGLLDFDDLITKAAALLAEQPTFVQFKLDQGIDHILVDEAQDTSPEQWKVVE 421
           R E +K   G++DFDDLI   A  + +    +  +L +     L+DE QDT  +Q+ +++
Sbjct: 370 RVEKQKKQLGVIDFDDLIRMLADEVVKPNNTLVPELRKKFPVALIDEFQDTDAKQYAILD 429

Query: 422 GLTSDFFSGEGARAGVTRTIFVVGDEKQSIFSFQGADPRAFGAMRSTFERKVGAEGFRRV 481
            +   + + E A       + ++GD KQ+I+ F+G D   +         K G +   R 
Sbjct: 430 AV---YPNPENANES---ALLMIGDPKQAIYRFRGGDIFTY--------LKAGRQADYRW 475

Query: 482 ELPHSFRSAPGVLEAVDAIFKSEVAHAGLTLDGVG------PVHAAIRADAPALVEIWPT 535
            +  ++RS  G+++A + +F      +    D  G      PV    +A A     I P 
Sbjct: 476 VMNTNWRSVEGMVKAYNRLFYGAPVASNRPADVFGFDIKYNPVEFTPKAAAAKTPLIDPA 535

Query: 536 TVPEPHPEPDNWRRPLDEVPS--DDPVS------RLAARIAGFIQAGIANGLAIPSRNG- 586
              +        R  ++ V    DD  +      ++A  IA  I   + N     + NG 
Sbjct: 536 EQDKVMKSAVTKRSAMNYVSMCLDDKENAHIMRRKMAQWIAQEIYR-LLNEAHFQTANGG 594

Query: 587 -RPMRAGDVLVLVRRRGRVFEAVIRALKELKDPRVQVAGADRLVVPEHIAALDLMALGDA 645
             P++  D+ +LV+ R       I+++ + K     V  +DR  +     A D++ L + 
Sbjct: 595 TAPVKPQDIAILVKDRTEA--GAIKSVLQQKG-LACVYLSDRSNLFASAEAKDVLRLLNG 651

Query: 646 LLSPHDDLSLASVLKSPLFGFTDDDLMALCPQRKGTLASVLATSDDTRHRAAAARLAG-- 703
           +   +D   +AS L SPL+G++             TL  +L   DD +  AA  ++    
Sbjct: 652 IWHANDTSKVASSLASPLWGYSAQ-----------TLIELLYHEDDAQWDAAIDKVLSLR 700

Query: 704 --W--KGEAEGLRPFDFYGRVLGRDGGRRAMLARLGPEAADVLDEFMALARTYEGAEPAS 759
             W  KG    L            D   RA+        ADVL++    + T++   P  
Sbjct: 701 DMWLQKGCMSVLLYLMQDSYQPHADSVERALTNY--QHLADVLEK---ASTTHQ--RPEQ 753

Query: 760 LAGFL---AFLRRGGAETKRDMESGRDEVRVMTAHGAKGLEAPLVILADTVDMPRPRIAG 816
           L  +L           E    +ES    +R++T HG+KGLE P+V +            G
Sbjct: 754 LLDWLNKQIHKPESDEELTLRLESDSQLIRLITQHGSKGLEYPIVFVPFATGYRDAAKNG 813

Query: 817 G----LLTLPGEGVPVLAPRKAEDPEVLAAARATAAARELEEYRRLFYVALTRA 866
                + T   E    L  +  + P+ +A  ++ + A ++    RL YVA+TRA
Sbjct: 814 NTTSQIFTYYDEEKQDLQMQLGQTPQAIARVQSESEAEDM----RLAYVAVTRA 863



 Score = 37.7 bits (86), Expect = 6e-06
 Identities = 39/133 (29%), Positives = 57/133 (42%), Gaps = 21/133 (15%)

Query: 30  VSANAGSGKTHVLARRVIRLLL-AGTPPGRILCLTYTKAAAANMANRVLAILGRWARMDD 88
           + A+AG+GKT  + R  +RLLL        IL +T+TKAA   +  R+ A L       +
Sbjct: 44  IEASAGTGKTFNITRLYLRLLLEKKLTVKEILVMTFTKAATEEIKGRIAATL------RE 97

Query: 89  AVLDAAIAETVGEAPDDALRARARRLF-------------AAALETPGGLKIQTIHAFCG 135
           A+L    A+  G   D       + LF             AA LE      + TIH FC 
Sbjct: 98  ALLIWQQAKDNGNEIDSGCDPVYQYLFNSCDIDESLALLKAAQLELDEA-SVFTIHGFCQ 156

Query: 136 GLLHRFPFEADVA 148
            ++ +  F +  A
Sbjct: 157 HVITQLAFNSGFA 169