Pairwise Alignments

Query, 245 a.a., tRNA pseudouridine synthase A from Xanthobacter sp. DMC5

Subject, 274 a.a., pseudouridine synthase from Pseudomonas simiae WCS417

 Score =  158 bits (400), Expect = 9e-44
 Identities = 103/245 (42%), Positives = 129/245 (52%), Gaps = 4/245 (1%)

Query: 3   RYKLTIEYDGTPFAGWQMQAD-LPTVQGVLAEAFQRFCGEKVTVAGAGRTDAGVHATGQV 61
           R  L +EY G+ + GWQ QA  + TVQ  L  A  +     V++  AGRTDAGVHA GQV
Sbjct: 8   RIALGVEYKGSRYRGWQRQASGVLTVQETLENALSKVADSPVSLMCAGRTDAGVHACGQV 67

Query: 62  AHVDLAKEWRTDTVRDAMTAQLRPHPVAVLSAERVPDSFDARFSATKRHYLYRIVNRRPD 121
            H D   E             L PH V+V  A+ +P  F ARF A  R Y Y I N +  
Sbjct: 68  VHFDTQAERSMKAWVMGANINL-PHDVSVTWAKVMPAHFHARFKAIARRYRYVIYNDQIR 126

Query: 122 LA-LDRDRAWRIPQKLDAEAMHAAAQRLLGKHDFSTFRAAECQAASPVKTLDQLDVSRHG 180
            A L+ +  W   + LDAE M  AAQ L+G HDFS FRA +CQA SP+K +  L V+RHG
Sbjct: 127 PAHLNEEITWN-HRPLDAERMAEAAQHLVGVHDFSAFRAGQCQAKSPIKEVHHLRVTRHG 185

Query: 181 DEIRVVTSARSFLHHQVRSMVGSLMRVGEGRWSADDLAAALAAADRTRCGPMAPAAGLYL 240
             I +   A +FLHH VR++ G LM +G G    +     L +  R   G  A   GLYL
Sbjct: 186 KMIVLDIRAGAFLHHMVRNIAGVLMTIGTGERPVEWAKEVLESRVRRTGGVTAHPFGLYL 245

Query: 241 AAVSY 245
             V Y
Sbjct: 246 VDVEY 250