Pairwise Alignments

Query, 245 a.a., tRNA pseudouridine synthase A from Xanthobacter sp. DMC5

Subject, 270 a.a., tRNA pseudouridine(38-40) synthase (EC 5.4.99.12) from Variovorax sp. SCN45

 Score =  153 bits (387), Expect = 3e-42
 Identities = 96/247 (38%), Positives = 127/247 (51%), Gaps = 5/247 (2%)

Query: 3   RYKLTIEYDGTPFAGWQMQADLPTVQGVLAEAFQRFCGEKVTVAGAGRTDAGVHATGQVA 62
           R  L I Y+G  + GWQ Q    TVQ  L  A  +F  + +    AGRTDAGVHA  QV 
Sbjct: 2   RLALGIRYNGQAYEGWQSQRSGRTVQDKLEAALSKFAAQPIGTLCAGRTDAGVHALMQVV 61

Query: 63  HVDLAKEWRTDTVRDAMTAQLRPHPVAVLSAERVPDSFDARFSATKRHYLYRIVNRRPDL 122
           H D   E    +        L P  +AV  A+ VPD F  R SA  R YLY +       
Sbjct: 62  HFDTTVEREPFSWMRGPNRFL-PDDIAVQWAQPVPDEFHCRASALARRYLYVLSQSPVRP 120

Query: 123 ALDRDRAWRIPQKLDAEAMHAAAQRLLGKHDFSTFRAAECQAASPVKTLDQLDVSRHGDE 182
           +LD  R       LD +AM AAA  L+G+HDFS+FRA+ CQA SPVK L +++++R G+ 
Sbjct: 121 SLDTGRVGWSMHALDGDAMRAAAALLVGRHDFSSFRASACQARSPVKDLRRIEITRVGEG 180

Query: 183 IR----VVTSARSFLHHQVRSMVGSLMRVGEGRWSADDLAAALAAADRTRCGPMAPAAGL 238
            R        A +FLHH +R+++G L+R+G G    + ++  L A  R    P   A GL
Sbjct: 181 ERCRWHFEFEADAFLHHMIRNLMGCLVRIGRGDEPVEWISQVLEARSRKVAAPTFSADGL 240

Query: 239 YLAAVSY 245
           Y     Y
Sbjct: 241 YFLGPLY 247