Pairwise Alignments

Query, 245 a.a., tRNA pseudouridine synthase A from Xanthobacter sp. DMC5

Subject, 286 a.a., tRNA pseudouridine (38-40)synthase from Pseudomonas putida KT2440

 Score =  161 bits (407), Expect = 2e-44
 Identities = 103/251 (41%), Positives = 131/251 (52%), Gaps = 16/251 (6%)

Query: 3   RYKLTIEYDGTPFAGWQMQAD-LPTVQGVLAEAFQRFCGEKVTVAGAGRTDAGVHATGQV 61
           R  L +EY G  + GWQ QA  +P+VQ  L +A  +   E ++V  AGRTDAGVH  GQV
Sbjct: 20  RIALGVEYKGARYRGWQRQASGVPSVQQALEQALSKVANEPISVVCAGRTDAGVHGCGQV 79

Query: 62  AHVDLAKEWRTDTVRDAMTAQLR-----PHPVAVLSAERVPDSFDARFSATKRHYLYRIV 116
            H D      T  VRD     +      PH ++V+ +  +P  F ARF A  R Y Y I 
Sbjct: 80  VHFD------TRAVRDERAWTMGTNFNLPHDISVVWSRPMPADFHARFKACARRYRYVIY 133

Query: 117 NR--RPDLALDRDRAWRIPQKLDAEAMHAAAQRLLGKHDFSTFRAAECQAASPVKTLDQL 174
           N   RP   L  +  W   + LD + M  AAQ LLG HDFS FRA++CQA SP+K +  L
Sbjct: 134 NDPIRP-AHLAEEVTWN-HRPLDVDRMAEAAQYLLGTHDFSAFRASQCQAKSPIKHIYHL 191

Query: 175 DVSRHGDEIRVVTSARSFLHHQVRSMVGSLMRVGEGRWSADDLAAALAAADRTRCGPMAP 234
            V+RHG  I +   A +FLHH VR++ G LM +G G          L   +R   G  A 
Sbjct: 192 RVTRHGQMIVLDVRATAFLHHMVRNIAGVLMAIGAGERPVAWAREVLEGRNRREGGVTAH 251

Query: 235 AAGLYLAAVSY 245
             GLYL  V Y
Sbjct: 252 PYGLYLVQVEY 262