Pairwise Alignments

Query, 345 a.a., hypothetical protein from Xanthobacter sp. DMC5

Subject, 346 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  181 bits (460), Expect = 2e-50
 Identities = 126/357 (35%), Positives = 177/357 (49%), Gaps = 23/357 (6%)

Query: 1   MRFSVSIPVMTAALALSVATASAEQITFVSQGGAYQEAQTKAILNP-----AAKLLGITI 55
           M  S+   V+  +L  +    +   +T VS GGA + AQ KA   P       K++    
Sbjct: 1   MLSSLKYSVLALSLMGATQAMAGPDLTVVSFGGANKAAQVKAFYAPWESAGNGKIVAGEY 60

Query: 56  NQDSAPDAWPVLKTQAATGKPIWDVIDAPTTICVRGGDQGMVEKLDFSKIPTAASMPAQY 115
           N + A      +K    T    WD+++  +    RG D+ M E LD       A      
Sbjct: 61  NGEMAK-----VKAMVDTKSVSWDLVEVESPELSRGCDEDMFEPLDPKLFGNTADYVKGA 115

Query: 116 KTPYSVAYEFYSSVLAYNKKKFASKAPQTWADFWDVKAFPGTRALRNHPQATMEAALLAD 175
             P  V +  +S+VLAYN  K AS AP +WADFWD K FPG R LR   + T+E AL+AD
Sbjct: 116 IQPCGVGFFVWSTVLAYNADKLAS-APTSWADFWDTKKFPGKRGLRKGAKYTLEFALMAD 174

Query: 176 GVPADKLYPL-----DVDRAFKKLEQIKPHITVWWTSGAQSAQLLADGEVDMEMAWNGRV 230
           GV    +Y +       DRAFKKL+++KP I  WW +GAQ  Q LA G+V M  A+NGR+
Sbjct: 175 GVAPKDVYKVLAGKDGQDRAFKKLDELKPSIQ-WWEAGAQPPQYLASGDVVMSSAYNGRI 233

Query: 231 AAVMKEGAPVSFTFNQGLLQETSLCIVKG--APNLETAYKFVNAAMTPDIQANFPAYIDY 288
           AAV KE + +   +N G+    +  I KG      E A KF+  ++ P  Q  +   I Y
Sbjct: 234 AAVQKE-SNLKVVWNGGIYDFDAWAIPKGLAKDRAEAAKKFIAFSVQPQQQKTYSENIAY 292

Query: 289 GPGNPAAYATGKISPERATQMPSAPENAAKQVLVSQAWWASPAGEDAIKRWAGFVQK 345
           GP N    A   ++ +    MP+ PEN A QV +  ++WA   GE   +R+  +  K
Sbjct: 293 GPAN--TQAVPLLAKDVLKDMPTTPENIANQVQIDVSFWAD-NGEQLEQRFNSWAAK 346