Pairwise Alignments

Query, 345 a.a., hypothetical protein from Xanthobacter sp. DMC5

Subject, 369 a.a., putrescine-binding periplasmic protein from Pseudomonas putida KT2440

 Score = 53.9 bits (128), Expect = 6e-12
 Identities = 63/267 (23%), Positives = 112/267 (41%), Gaps = 46/267 (17%)

Query: 66  VLKTQAATGKPIWDVIDAPTTICVRGGDQGMVEKLDFSKIPTAASMPA------QYKTP- 118
           V++++   G+  +DV+ A   +       G++++LD SK+P  + +        Q   P 
Sbjct: 67  VMQSKLMAGRSGYDVVVASADLLPNLIKAGVLKRLDRSKLPNWSHLDPDVLAKLQSNDPG 126

Query: 119 --YSVAYEFYSSVLAYNKKKFASK-APQTWADFWDV--------KAFPGTRALRNHPQAT 167
             Y+  Y + ++ + Y+  K  S   P    + WD+        K      A+ + P   
Sbjct: 127 NSYAAPYLWGTTGIGYDADKVKSLLGPDAPVNSWDLIFKEENLAKLRQCGVAMLDAPGEV 186

Query: 168 MEAALLADGVPADKLYPLDVDRAFKKLEQIKPHITVWWTSGAQSAQLLADGEVDMEMAWN 227
           +  AL   G+P +   P D  +A + L +++PHI  + +S   S   LA+G V + + W 
Sbjct: 187 IPIALHYLGLPYNSHNPDDYKKAQELLLKLRPHIAYFDSSRFISD--LANGNVCVVLGWA 244

Query: 228 GRVA-----------------AVMKEGAPVSFTFNQGLLQETSLCIVKGAPNLETAYKFV 270
           G V+                 ++ +EGAPV            S+  +  APN E    F+
Sbjct: 245 GGVSDAQKASELAGNHRNLVYSIPREGAPVWVE---------SMVQLNDAPNPEQGLAFI 295

Query: 271 NAAMTPDIQANFPAYIDYGPGNPAAYA 297
           N  + P++ A    Y+ Y   N  A A
Sbjct: 296 NYMLRPEVIAESSNYLSYPNANKDATA 322