Pairwise Alignments

Query, 345 a.a., hypothetical protein from Xanthobacter sp. DMC5

Subject, 362 a.a., putrescine-binding periplasmic protein from Pseudomonas putida KT2440

 Score = 54.7 bits (130), Expect = 4e-12
 Identities = 66/261 (25%), Positives = 103/261 (39%), Gaps = 27/261 (10%)

Query: 62  DAWPVLKTQAATGKPIWDVIDAPTTICVRGGDQGMVEKLDFSKIPTAASM-PAQYK---- 116
           D+   L+ +   G+  +DV+        R    G    LD SK+P    + P   K    
Sbjct: 57  DSNETLEGKLLAGRTGYDVVVPSNHFLARQAQAGAFLPLDRSKLPNWQHLDPKLLKQLEQ 116

Query: 117 ----TPYSVAYEFYSSVLAYNKKKFASKAPQTWADFWDVKAFPGTR--------ALRNHP 164
                 Y+V Y + ++ + YN  K  +       D W V   P           A  + P
Sbjct: 117 NDPGNQYAVPYLWGTNGIGYNVDKVKAALGVDHIDSWAVLFEPENLKKLKQCGVAFMDSP 176

Query: 165 QATMEAALLADGVPADKLYPLDVDRAFKKLEQIKPHITVWWTSGAQSAQLLADGEVDMEM 224
                A L   G+      P D  +A  +L +++P+IT + +S   S   LA+G+V +  
Sbjct: 177 DELFPAVLNYLGMDPRSEKPGDYAKAEARLLELRPYITYFHSSKYVSD--LANGDVCIAF 234

Query: 225 AWNGRV------AAVMKEGAPVSFTFNQ--GLLQETSLCIVKGAPNLETAYKFVNAAMTP 276
            ++G V      A   K G  V+++  +    L    L I K A N E A  F+N  + P
Sbjct: 235 GYSGDVFQAANRAVEAKNGVKVAYSIPKEGSNLWFDLLAIPKDANNPEQALAFINYLLDP 294

Query: 277 DIQANFPAYIDYGPGNPAAYA 297
            + A   A + Y   NP A A
Sbjct: 295 KVIAKVSATVGYANANPDAKA 315