Pairwise Alignments

Query, 345 a.a., hypothetical protein from Xanthobacter sp. DMC5

Subject, 347 a.a., putative spermidine/putrescine-binding periplasmic protein from Pseudomonas putida KT2440

 Score =  192 bits (487), Expect = 1e-53
 Identities = 117/340 (34%), Positives = 182/340 (53%), Gaps = 11/340 (3%)

Query: 12  AALALSVATA-SAEQITFVSQGGAYQEAQTKAILNPAAKLLGITINQDSAPDAWPVLKTQ 70
           A LAL ++ A +A+Q+  V  GGA Q+AQ +AI  P     G  + Q         ++  
Sbjct: 13  ALLALGLSNAQAAQQMVVVGYGGAGQKAQDEAIFKPFVAQDGSQLIQSEYNGEMARIQVM 72

Query: 71  AATGKPIWDVIDAPTTICVRGGDQGMVEKLDFSKIPTAASMPAQYKTPYSVAYEFYSSVL 130
           A TG   WDV+       +RG D+G+ E+LD+ ++  AA +          A   +S  +
Sbjct: 73  ADTGNVDWDVVQIEGPDLMRGCDEGIYERLDWQRLGHAAELIPAAAQDCGSAALVWSVAI 132

Query: 131 AYNKKKFASKAPQTWADFWDVKAFPGTRALRNHPQATMEAALLADGVPADKLY-----PL 185
           AY++ K A +AP +WADFWDV  +PG R LR      +E ALLADGV  + +Y     P 
Sbjct: 133 AYDRSKLA-QAPASWADFWDVDKYPGKRGLRKRAVYNLEFALLADGVKVEDVYRVLSTPA 191

Query: 186 DVDRAFKKLEQIKPHITVWWTSGAQSAQLLADGEVDMEMAWNGRVAAVMKEGAPVSFTFN 245
            V+RAF KL ++KPHI  WW +GAQ AQ LA G+V M   ++GR+A   ++G+P++  + 
Sbjct: 192 GVERAFAKLSELKPHIQ-WWDAGAQPAQWLAAGDVVMTSTYSGRIAVAAQQGSPLAVVWP 250

Query: 246 QGLLQETSLCIVKGAPNLETAYKFVNAAMTPDIQANFPAYIDYGPGNPAAYATGKISPER 305
             L       I+KG+ +++ A + +  A  PD Q  +   I YGP N  A A  ++ P  
Sbjct: 251 GSLYGMDYWAIIKGSRHVDQAKRLIAYANQPDTQVRYVQQIPYGPTNTQAAA--RLDPAL 308

Query: 306 ATQMPSAPENAAKQVLVSQAWWASPAGEDAIKRWAGFVQK 345
           A  +P++P+N    + ++  +W    GE+  +R+  +  K
Sbjct: 309 ANWVPTSPQNLQGALAMNVEFWVD-HGEELEQRFNAWASK 347