Pairwise Alignments

Query, 345 a.a., hypothetical protein from Xanthobacter sp. DMC5

Subject, 359 a.a., putrescine-binding periplasmic protein from Pseudomonas putida KT2440

 Score = 56.6 bits (135), Expect = 9e-13
 Identities = 77/333 (23%), Positives = 132/333 (39%), Gaps = 60/333 (18%)

Query: 10  MTAALALSVATASAEQITFVSQGGAYQEAQTKAILNPAAKLLGITINQDSAPDAWPVLKT 69
           + A L L+ + ASA +   +    +Y    T      A+   GI    D   D+   L  
Sbjct: 5   LLAPLMLAASVASAAETVKIYNWSSYVAPDTLKNFQQAS---GIVPTYD-VYDSNETLDG 60

Query: 70  QAATGKPIWDVIDAPTTICVRGGDQGMVEKLDFSKIPTAASM-PAQYKT--------PYS 120
           +  TG   +DV+        R      +++LD SK+P   ++ P   K          Y 
Sbjct: 61  KLMTGNSGYDVVFPSNHFMARQIQGKALKRLDKSKLPNWHNLNPVLLKALEVNDPGNQYG 120

Query: 121 VAYEFYSSVLAYN----KKKFASKAPQTWADFWDVKAFP---------GTRALRNHPQAT 167
             Y + S+ + YN    K      AP    D WD+   P         G   L N P+  
Sbjct: 121 FPYLWGSTGIGYNIDKVKAVLGDNAP---VDSWDLIFKPEYMSKLKSCGVAVLDNGPEL- 176

Query: 168 MEAALLADGVPADKLYPLDVDRAFKKLEQIKPHITVWWTSGAQSAQLLADGEVDMEMAWN 227
           +  AL   G+P     P D ++A   L +++P+I+ + +S       LA+G++ + + ++
Sbjct: 177 LPIALHYLGLPHHSQDPKDYEKAKDLLMKVRPYISYFHSSKYTGD--LANGDICVVVGFS 234

Query: 228 GRVA-----------------AVMKEGAPVSFTFNQGLLQETSLCIVKGAPNLETAYKFV 270
           G V                  ++ KEGAP+ F           + +   AP+ +  Y ++
Sbjct: 235 GDVLQAKNRADEANNGVKVGYSIPKEGAPMWFDM---------VAMPVDAPDEKAGYAYM 285

Query: 271 NAAMTPDIQANFPAYIDYGPGNPAAYATGKISP 303
           N  + P++ AN   ++ Y  GN    A G + P
Sbjct: 286 NYLLQPEVMANISNHVQYANGN--LKADGLVDP 316