Pairwise Alignments

Query, 998 a.a., hypothetical protein from Xanthobacter sp. DMC5

Subject, 878 a.a., Carbon monoxide dehydrogenase large chain (EC 1.2.99.2) from Sphingobium sp. HT1-2

 Score =  385 bits (988), Expect = e-111
 Identities = 292/871 (33%), Positives = 421/871 (48%), Gaps = 59/871 (6%)

Query: 2   LDTPHDKAGGWVGRAIERVEDAALLTGGGRYLDDLGVKPGTLHMAILRAPHAHADILSID 61
           ++ P   A  ++G+ + R ED  LLTG G ++DD+ + PG LH A +R+P A   I SID
Sbjct: 1   MNAPPISAQRFIGQRVPRKEDGRLLTGRGSFVDDI-ILPGMLHAAFVRSPIARGTIRSID 59

Query: 62  TTAAKALPGVAAVLTGADVAGLTTSLVVGVKAPVEC--WPMAVDRVRFVGEPVALVVAED 119
           T  A+A PGV AVLT AD+A    +++     PVE    P+A  RV +VG PVALV+A+D
Sbjct: 60  TDVARAQPGVHAVLTQADLAPFGVTMLSFFLGPVEVAMTPLADGRVAYVGHPVALVIADD 119

Query: 120 RYVAEDALDLIEVSYEMRPAVVDPLAAMDAG--APLLHDGFPSNIASDRSFRYGDP--ET 175
           RY+AEDA  L+ V Y    AVV     +D     P +H     N+A+       D   E 
Sbjct: 120 RYLAEDAASLVVVDYAEEAAVV----TLDDARLGPRVHPDTDDNVAALMGEEDADAALEA 175

Query: 176 AFAEAAHRISISVRYPRNSCTPIETYGLVAEYDPHEDAYDVLANFQGPFSIHAVISRALK 235
             A A H +S S+R+ R + +P+ET G+VA      +   V     GP  +   ++ AL 
Sbjct: 176 LLAGAPHLVSQSIRHQRIAQSPMETRGVVASLQGESELL-VHITCAGPQLVARWLTLALD 234

Query: 236 VPGNRLRLRTPRDSGGSFGIKQGIFPYIVLGAVAARVSGRPVKWIEDRLEHLMASVSATN 295
            PG  +R+   +D GGSFG+K   +   V   +AA +  RPVKWIEDR+E+L A+  A  
Sbjct: 235 RPGLSVRV-IAKDVGGSFGLKNHPWMEEVSAILAAMLLRRPVKWIEDRIENLTAANQARE 293

Query: 296 RATTLTAAVTADGRITALDWDQVEDCGAHLRAPEPATLYRMHGNLTGAYDIRNLTVRNRV 355
           +  TL AA   DGR+ A   D   + GA+    E      M   L  AY+I   +  +R 
Sbjct: 294 QEMTLRAAFDTDGRLIASHADYALNNGAYPMGAEANIAVHMF--LWAAYNIPAYSFVSRG 351

Query: 356 VVTNKCPTGLNRGFGGPQVYLALERLVQRIAVELGLDPLDVIRRNLVPADAFPYRTASGA 415
             +N       RG    +  LA E L+ R A ++G+DP+++ RRNL  A   P  T  G 
Sbjct: 352 WYSNTPGLAAYRGPWAIET-LARETLLDRAARQIGIDPVELRRRNLCTAADQPSVTPLGI 410

Query: 416 LLDSGDYQKTLEAGLAAGDLAELLVRRDRARAEGRIYGIGYAAVVEPSVSNMGYIATVLT 475
             +     + LE  L   D+      +  ARA+GR  G+G AA +EP+ +  G IA +  
Sbjct: 411 PREDITPAQCLEKLLEVVDVPAFRAEQAAARAQGRYLGLGLAAYIEPTGA-AGSIAVM-- 467

Query: 476 PAERHKAGPKNGAQATATIAIDPVGSVTVHVASVPQGQGHRTVLSQVVADVLGLKPSDIR 535
                           A + IDP G V   ++   QG G +T ++Q +AD LG+   D+ 
Sbjct: 468 ------------TGELAQLRIDPTGRVVAVMSVHSQGHGTQTTMAQCIADQLGVPIEDVT 515

Query: 536 VNAEMDTGKDAWSIASGNYASRFAAAVAGAAKLAADRIAARLARVAAAQLNVPAEDVMFA 595
           +    D          G   SR      GAA  A   +A ++  VAA  LN   E +  A
Sbjct: 516 I---FDGDSSRGGFGPGAGGSRQGVIGGGAAIRAGRLLADKVKVVAAHLLNASPEAISLA 572

Query: 596 GGKIAARSNPANAVPFSRVAALSHWSPAQLPEGVAPTIRETVFWTPPELTAADEGDHINS 655
            G +     P        +A +++  P +LP G+   +     + PP +T         +
Sbjct: 573 DGMVHVAGAPEMRRTLREIAEIAYGEPGRLPPGMETGLEAQYRYDPPHMTF--------T 624

Query: 656 SLCHGFIFDYCGIEIDRDTGAIRIDRYVTAHDCGTILHPGMVDGQIRGGFTHALGAALLE 715
           S  H      C +E+D DTG + I R+V++ DCG +++P +V+GQI GG   A+G+ LLE
Sbjct: 625 SAAHA-----CIVEVDADTGFVTIRRWVSSEDCGVMINPAVVEGQIAGGLAQAIGSVLLE 679

Query: 716 EYAYGADGSFLTGTFADYLVPTAMEVPEPVIVHTQTPSPFTPLGAKGVGEGNCMSTPACL 775
           + A  A G+    TF DY +PT  +VP+   VH  TPS     G +GVGEG C+  P  L
Sbjct: 680 DAARDAQGNPTAATFKDYALPTIFDVPDFEYVHADTPSQ-AEGGFRGVGEGGCIIGPPTL 738

Query: 776 ANAVADAL---GITDVRLPLAPSAVAALIHGAEPPAPAGARAAP--------APAPSGKG 824
            NA+ADAL   G   V LPL P  +  +I G   P    +R  P        APAP+   
Sbjct: 739 VNAIADALSPFGEVPVDLPLTPDKLMTVIEGQPWPERPVSRFHPDHRAPEVDAPAPAAPP 798

Query: 825 ERLLRGEGKARIAALPEAVWAMLLDPETLAA 855
              +       I    + V A  + P+ + A
Sbjct: 799 APTVAPAAPVGIDGAWKLVLATPMGPQPMVA 829



 Score = 26.6 bits (57), Expect = 0.008
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 6/54 (11%)

Query: 913 FGGGSGRVRLNPDGAGGTELSYTYEAFVGGKVASVGGRLLDGAAKVIIGQFFAA 966
           F G S R    P GAGG+      +  +GG  A   GRLL    KV+      A
Sbjct: 517 FDGDSSRGGFGP-GAGGSR-----QGVIGGGAAIRAGRLLADKVKVVAAHLLNA 564