Pairwise Alignments

Query, 375 a.a., Nitrate/nitrite binding protein NrtA from Xanthobacter sp. DMC5

Subject, 408 a.a., Nitrate-binding regulatory protein (nasS) (from data) from Pseudomonas simiae WCS417

 Score =  147 bits (370), Expect = 7e-40
 Identities = 115/370 (31%), Positives = 170/370 (45%), Gaps = 20/370 (5%)

Query: 4   LAIGFIPLTDAAVLIAAAERGFAMAEGIEIDLHKEVSWANIRDKVNIGLLDGAHMLGPLA 63
           L +GF+ L+D A ++ AA +GFA   G+ ++L ++ SWAN+RDK+  G LD AH L  L 
Sbjct: 28  LDLGFMALSDCASMVVAATQGFAQPYGLTLNLKRQTSWANLRDKLVSGELDAAHSLYGLI 87

Query: 64  IASSLGLGHVR-VPLVVPFALNLNGSAITIDKHVYAAMGEVGEDLATAPGAALALGKVVR 122
            A  LG+G V    + V   LN NG +I + + +    G +  +         AL + V 
Sbjct: 88  YAVHLGIGGVAPTDMAVLMGLNQNGQSINLSRGL-QQQGVITPE---------ALDRHVH 137

Query: 123 QRKAEGRDPLVFAAVYSFSTHTYLIRHFLKAGGVDPDRDVRLVVVPPPFMAESLRGGLIH 182
           Q     R  L FA  +   TH   + ++L + G+ P +DV  VVVPPP M   L+ G I 
Sbjct: 138 Q----SRTKLTFAQTFPTGTHAMWLYYWLASQGIHPLQDVDSVVVPPPQMVAHLQAGRID 193

Query: 183 GFSVGSPWNSVAVDADVGRIAVLGAELFGWVPEKVLGVHARFANAEPEVLHRLVRALYAA 242
           GF VG PW + AV  + G        ++   PEKVLG    F +  P     LV A+  A
Sbjct: 194 GFCVGEPWCASAVKQNQGFTLATTQAIWPDHPEKVLGCTQAFVDQYPNTARVLVMAILEA 253

Query: 243 ARWCEDPA-NHEDLAKLLGEPRHLNLPADILRRTLDGRLHTAPGGVLRSHPDYLVLNRDG 301
           +R+ E+ + N    A+LL    +L+ P D +   L G      G   +  P  L    DG
Sbjct: 254 SRFIEESSENRRSTAQLLSGREYLDAPLDCIEPRLLGTYDDGLGNHWQD-PHALRFFADG 312

Query: 302 -ANRPSPDHALWMYAQIVAAGQGEFAADAAREAMGVYRPDIFDAAVGPVPVKHPEPDCVG 360
             N P     +W   Q    G      D    A  V +  ++  A   + +    PD   
Sbjct: 313 EVNLPYLSDGMWFMTQFRRWGLLREDPDYLGVARQVQQLPLYRQAAAALGIATKHPDMRS 372

Query: 361 TQF--GEIFD 368
           +Q   G+++D
Sbjct: 373 SQLIDGKVWD 382