Pairwise Alignments

Query, 343 a.a., Spermidine/putrescine-binding periplasmic protein from Xanthobacter sp. DMC5

Subject, 362 a.a., putrescine-binding periplasmic protein from Pseudomonas putida KT2440

 Score = 77.8 bits (190), Expect = 4e-19
 Identities = 96/353 (27%), Positives = 141/353 (39%), Gaps = 35/353 (9%)

Query: 11  ALAAFVAGPASAAEKLVVSTWGGSFRDLIAEAIASKFTKDTGVEVEYITGGTIDRLNKAK 70
           A     A    AA  + V  W     D I +   + F   +G++V Y    + + L + K
Sbjct: 11  AFTLLFATTTQAAPTVSVYNW----TDYIGDTTLADFQASSGIKVVYDVFDSNETL-EGK 65

Query: 71  LAKGSPESDITFTTAHVGWLYANDDLFETLDLSKMPNASKLVPQA-----KVSPYHIGAW 125
           L  G    D+   + H     A    F  LD SK+PN   L P+      +  P +  A 
Sbjct: 66  LLAGRTGYDVVVPSNHFLARQAQAGAFLPLDRSKLPNWQHLDPKLLKQLEQNDPGNQYAV 125

Query: 126 AYVYT---IGYRPDLTPKNI---NFSSWADLWNPE----LK----GMLAAPD-FDPSHII 170
            Y++    IGY  D     +   +  SWA L+ PE    LK      + +PD   P+ + 
Sbjct: 126 PYLWGTNGIGYNVDKVKAALGVDHIDSWAVLFEPENLKKLKQCGVAFMDSPDELFPAVLN 185

Query: 171 AVSALLAGGSPADWQKGEQKLLALKPNFKAFYTND-----ANSQQLIATGETPVQIMLSM 225
            +        P D+ K E +LL L+P    F+++      AN    IA G +   +  + 
Sbjct: 186 YLGMDPRSEKPGDYAKAEARLLELRPYITYFHSSKYVSDLANGDVCIAFGYSG-DVFQAA 244

Query: 226 NAYYMIAQGVPIKLVIPKEGGVLGIDTMAIMKGSKNRELAEKFINTALDPEVQGKIAELK 285
           N       GV +   IPKEG  L  D +AI K + N E A  FIN  LDP+V  K++   
Sbjct: 245 NRAVEAKNGVKVAYSIPKEGSNLWFDLLAIPKDANNPEQALAFINYLLDPKVIAKVSATV 304

Query: 286 KGSPTVLGAK--VSAETAKLPGVFTTAEQWDKETI--IIDHKLRAEKTAEWRK 334
             +     AK  + A     P ++   E  DK  I      K+    T  W K
Sbjct: 305 GYANANPDAKAYMDASLVNNPEIYPPQEVLDKLYISSTPSPKIMRVMTRSWSK 357