Pairwise Alignments

Query, 609 a.a., ABC transporter ATP-binding protein uup from Xanthobacter sp. DMC5

Subject, 555 a.a., ADP/ATP ratio sensor and inhibitor of translation from Pseudomonas putida KT2440

 Score =  275 bits (704), Expect = 3e-78
 Identities = 176/517 (34%), Positives = 263/517 (50%), Gaps = 45/517 (8%)

Query: 20  LLDGAELSVSAGERVCLVGRNGSGKSTLLKVAAGLVEPDSGTRFFQPGTTVRYLQQEPDF 79
           +L    LS   G ++ ++G NG+GKSTLL++ AG+ +   G     P   V YL QEP  
Sbjct: 21  ILKNISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFDGEARPMPDINVGYLPQEPQL 80

Query: 80  SGYATTLAYVEAGLGPGDDAYR------AQYLLTEL----------------------GL 111
               T    VE  +    DA        A Y   +                        L
Sbjct: 81  DPTKTVREVVEEAVSVIKDAQARLDEVYAAYAEPDADFDKLAAEQAKLEAILQAADGHNL 140

Query: 112 TGQEDPA--------------HLSGGEARRAALARVIAPEPDVLLLDEPTNHLDLPAIEW 157
             Q D A              HLSGGE RR AL R++   PD+LLLDEPTNHLD  ++ W
Sbjct: 141 ERQLDVAADALRLPAWDARIEHLSGGEKRRVALCRLLLSAPDMLLLDEPTNHLDADSVAW 200

Query: 158 LESELKGLKSAMVLISHDRRFLETLSRATVWLDRGQTRRLEQGFGAFEAWRDEVLEQEET 217
           LE  L      +V I+HDR FL+ ++   + LDRG     E  +  +   + E L QE  
Sbjct: 201 LERFLHDFPGTVVAITHDRYFLDNVAGWILELDRGAGIPYEGNYSGWLEAKSERLAQESK 260

Query: 218 ERHKLDRKIVAELDWLRYGVTARRKRNVRRLGLLHSMRKDRRDERRAVGNVKLAVSEAEA 277
           ++   ++ +  EL+W+R G  AR+ ++  RL     M+     +R      ++ +     
Sbjct: 261 QQSAHEKAMKEELEWVRKGAKARQSKSKARLQRFEEMQSQEFQKRSETN--EIYIPAGPR 318

Query: 278 SGKLVIEAKHIAKAFGEREVVKDFSTRILRGDRIGIIGPNGAGKTTLIKLLTGELAPDSG 337
            G  VIE K++ K +G+R ++ + S  + +G  +G+IG NGAGK+TL ++L G+  PDSG
Sbjct: 319 LGDKVIEFKNVTKGYGDRVLIDNLSFSMPKGAIVGVIGGNGAGKSTLFRMLMGKEQPDSG 378

Query: 338 TVKLGTNLEVASLDQKRAALDPGTTLRDALTGGGSDQVQVGGAPKHVMGYLKDFLFTPEQ 397
           ++++G  +++A +DQ R  LD   T+   ++  GSDQ+++G        Y+  F F    
Sbjct: 379 SIEIGETVQLACVDQSREDLDGAKTVFQQIS-DGSDQIRIGNYEIPSRTYVGRFNFKGGD 437

Query: 398 ANAPLSVLSGGERGRLMLARALALPSNVLVLDEPTNDLDLETLDLLQEMVADYPGTVILV 457
               +  LSGGERGRL LA  L    NVL+LDEP+NDLD+ETL  L+E + D+PG  I++
Sbjct: 438 QQKFVKDLSGGERGRLHLALTLKEGGNVLLLDEPSNDLDVETLRSLEEALLDFPGAAIVI 497

Query: 458 SHDRDFLDRTVSSVIMAEGDGVFREYAGGYSDMLSQR 494
           SHDR FLDR  + ++  E D     + G Y++  + R
Sbjct: 498 SHDRWFLDRVATHILAYEDDSNVVFFEGNYTEYEADR 534



 Score =  100 bits (249), Expect = 2e-25
 Identities = 79/283 (27%), Positives = 127/283 (44%), Gaps = 41/283 (14%)

Query: 294 EREVVKDFSTRILRGDRIGIIGPNGAGKTTLIKLLTGELAPDSGTVKLGTNLEVASLDQK 353
           +RE++K+ S     G +IG++G NGAGK+TL++++ G      G  +   ++ V  L Q+
Sbjct: 18  KREILKNISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFDGEARPMPDINVGYLPQE 77

Query: 354 RAALDPGTTLRDALTGGGS---------DQVQVGGAP----------------------- 381
              LDP  T+R+ +    S         D+V    A                        
Sbjct: 78  -PQLDPTKTVREVVEEAVSVIKDAQARLDEVYAAYAEPDADFDKLAAEQAKLEAILQAAD 136

Query: 382 ----KHVMGYLKDFLFTPEQANAPLSVLSGGERGRLMLARALALPSNVLVLDEPTNDLDL 437
               +  +    D L  P   +A +  LSGGE+ R+ L R L    ++L+LDEPTN LD 
Sbjct: 137 GHNLERQLDVAADALRLPAW-DARIEHLSGGEKRRVALCRLLLSAPDMLLLDEPTNHLDA 195

Query: 438 ETLDLLQEMVADYPGTVILVSHDRDFLDRTVSSVI-MAEGDGVFREYAGGYSDMLSQRGR 496
           +++  L+  + D+PGTV+ ++HDR FLD     ++ +  G G+   Y G YS  L  +  
Sbjct: 196 DSVAWLERFLHDFPGTVVAITHDRYFLDNVAGWILELDRGAGI--PYEGNYSGWLEAKSE 253

Query: 497 GVEARDKSAPAAKAKGGEQKPDAGKGTGGAAAGGKRRLSFHEQ 539
            +    K   A +    E+     KG     +  K RL   E+
Sbjct: 254 RLAQESKQQSAHEKAMKEELEWVRKGAKARQSKSKARLQRFEE 296



 Score = 87.8 bits (216), Expect = 1e-21
 Identities = 69/228 (30%), Positives = 103/228 (45%), Gaps = 18/228 (7%)

Query: 15  FGATPLLDGAELSVSAGERVCLVGRNGSGKSTLLKVAAGLVEPDSGTRFFQPGTTVRYL- 73
           +G   L+D    S+  G  V ++G NG+GKSTL ++  G  +PDSG+   + G TV+   
Sbjct: 333 YGDRVLIDNLSFSMPKGAIVGVIGGNGAGKSTLFRMLMGKEQPDSGS--IEIGETVQLAC 390

Query: 74  --QQEPDFSGYATTLAYVEAGLGPGDDAYRAQYLLTELGLTG---------QEDPAHLSG 122
             Q   D  G  T    +  G    D      Y +      G         Q+    LSG
Sbjct: 391 VDQSREDLDGAKTVFQQISDG---SDQIRIGNYEIPSRTYVGRFNFKGGDQQKFVKDLSG 447

Query: 123 GEARRAALARVIAPEPDVLLLDEPTNHLDLPAIEWLESELKGLKSAMVLISHDRRFLETL 182
           GE  R  LA  +    +VLLLDEP+N LD+  +  LE  L     A ++ISHDR FL+ +
Sbjct: 448 GERGRLHLALTLKEGGNVLLLDEPSNDLDVETLRSLEEALLDFPGAAIVISHDRWFLDRV 507

Query: 183 -SRATVWLDRGQTRRLEQGFGAFEAWRDEVLEQEETERHKLDRKIVAE 229
            +    + D       E  +  +EA R + L     + H++  K +A+
Sbjct: 508 ATHILAYEDDSNVVFFEGNYTEYEADRKKRLGDAAAQPHRVRHKKLAQ 555



 Score = 26.2 bits (56), Expect = 0.004
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 6/44 (13%)

Query: 551 DLRANLEKLAAEIADPALYARDPARFDKASAALAETQAALDAAE 594
           D +A L+++ A  A+P       A FDK +A  A+ +A L AA+
Sbjct: 99  DAQARLDEVYAAYAEP------DADFDKLAAEQAKLEAILQAAD 136



 Score = 25.0 bits (53), Expect = 0.009
 Identities = 13/36 (36%), Positives = 18/36 (50%)

Query: 574 ARFDKASAALAETQAALDAAEEEWLRLEILKEELEG 609
           AR D+  AA AE  A  D    E  +LE + +  +G
Sbjct: 102 ARLDEVYAAYAEPDADFDKLAAEQAKLEAILQAADG 137