Pairwise Alignments

Query, 544 a.a., putative ABC transporter ATP-binding protein YejF from Xanthobacter sp. DMC5

Subject, 606 a.a., ABC transporter permease from Agrobacterium fabrum C58

 Score =  454 bits (1167), Expect = e-132
 Identities = 258/563 (45%), Positives = 349/563 (61%), Gaps = 36/563 (6%)

Query: 5   LLSVRDLSVAFRRGDGAPPALAVKTVSFELAKGETLALVGESGSGKSVTALSVLKLLPYP 64
           LLSV  LSV F  GD       V  +SF +  G T+A+VGESGSGKSVT+LS ++L    
Sbjct: 9   LLSVEGLSVEF--GDSR----VVDDISFRVEPGRTVAVVGESGSGKSVTSLSTMRLADMM 62

Query: 65  SASHPSGEILFKGRDLLTVSERELRGIRGNNITMVFQEPMSSLNPLHTIERQVGEMLILH 124
            A++P+G+ILF+G+DLL  S++E+R IRG  I M+FQEPM+SLNP+ TI  Q+ E+L+LH
Sbjct: 63  GATYPTGKILFEGKDLLKASQKEMRSIRGKEIAMIFQEPMTSLNPVFTIGDQICEVLVLH 122

Query: 125 RGMSAHAARARTLELLAEVGIPQPEERLSAYPHQLSGGQRQRVMIAMALANEPDLLIADE 184
             +   AA  +  +LL  V +P   E L  YPHQLSGG RQRVMIAMALA  P LLIADE
Sbjct: 123 EKLGKTAAMEQAKQLLDMVRLPDAAELLHRYPHQLSGGMRQRVMIAMALACRPKLLIADE 182

Query: 185 PTTALDVTVQAQILKLLKELQARLGMAMLFITHDLGIVRKIADRVCVMQKGEIVEQGGAE 244
           PTTALDVT+QAQIL ++++LQ +LGM M+FITHD+G+V ++AD V VM KG+ VE+G  +
Sbjct: 183 PTTALDVTIQAQILNIMRDLQKKLGMGMVFITHDMGVVAEMADDVVVMWKGKKVEEGPVK 242

Query: 245 ETFQHPRHPYTQALLKAEPK---------PDPAPIAP--------------------DAP 275
           + F +P+HPYT+ALL A P+         P   P+                      D  
Sbjct: 243 DIFANPQHPYTRALLSAVPRLGSMEGEAFPKRLPLTVLQDGQPVVIGEERVQDTAKYDQK 302

Query: 276 LVMEANDLKVYFPIKRGILRKTVGHVKAVDGVSIAIRRGETLGVVGESGSGKTTLGLALL 335
            ++   DL V F I++ +  K    + AV  VS  I  GETL +VGESGSGK+T+G  + 
Sbjct: 303 PLLSVKDLFVRFDIRKNLFGKATHRLSAVQKVSFDIHAGETLALVGESGSGKSTIGRTIQ 362

Query: 336 RLISS-AGPIAFLGKPIDALSFKAMRPLRSDLQIVFQDPFGALSPRMSVAEIVGEGLLVH 394
           +L ++ +G IAF G+    +S      +R ++Q +FQDPF +L PR +V   + E +  H
Sbjct: 363 QLQTAVSGEIAFNGRSYSQMSAAERFRMRQEVQYIFQDPFASLDPRKTVGFSIAEPINTH 422

Query: 395 QRQLSADERDARVVAALADVGLDPETRHRYPHEFSGGQRQRISIARAMALEPSFVVLDEP 454
                      RV   L  VGL  E   RYPHEFSGGQRQR+ IARA+A +P  ++ DE 
Sbjct: 423 GLINDQKAVRRRVDELLERVGLSSEHAARYPHEFSGGQRQRVCIARALASDPKLIIADEA 482

Query: 455 TSALDMIVQAQIVDLLRALQKKRDLTFMFISHDLRVVSALASRILVMRNGKMVEEGPAHD 514
            SALD+ +QAQI++L   LQ +R L ++FISHD+ VV  ++ R+ V+  G+++E G    
Sbjct: 483 LSALDVSIQAQIINLFMDLQAERGLAYLFISHDMAVVEKMSHRVAVLYLGQIMELGSRQQ 542

Query: 515 VFEHPKEDYTRALFAAAFNLDAT 537
           VFE P  DYTR L +A    D T
Sbjct: 543 VFETPTHDYTRRLLSAVPVADPT 565



 Score =  199 bits (506), Expect = 3e-55
 Identities = 121/270 (44%), Positives = 166/270 (61%), Gaps = 14/270 (5%)

Query: 4   PLLSVRDLSVAF--RR---GDGAPPALAVKTVSFELAKGETLALVGESGSGKSVTALSVL 58
           PLLSV+DL V F  R+   G       AV+ VSF++  GETLALVGESGSGKS    ++ 
Sbjct: 303 PLLSVKDLFVRFDIRKNLFGKATHRLSAVQKVSFDIHAGETLALVGESGSGKSTIGRTIQ 362

Query: 59  KLLPYPSASHPSGEILFKGRDLLTVSERELRGIRGNNITMVFQEPMSSLNPLHTIERQVG 118
           +L      +  SGEI F GR    +S  E   +R   +  +FQ+P +SL+P  T+   + 
Sbjct: 363 QL-----QTAVSGEIAFNGRSYSQMSAAERFRMR-QEVQYIFQDPFASLDPRKTVGFSIA 416

Query: 119 EMLILHRGMSAH-AARARTLELLAEVGIPQPEERLSAYPHQLSGGQRQRVMIAMALANEP 177
           E +  H  ++   A R R  ELL  VG+    E  + YPH+ SGGQRQRV IA ALA++P
Sbjct: 417 EPINTHGLINDQKAVRRRVDELLERVGLSS--EHAARYPHEFSGGQRQRVCIARALASDP 474

Query: 178 DLLIADEPTTALDVTVQAQILKLLKELQARLGMAMLFITHDLGIVRKIADRVCVMQKGEI 237
            L+IADE  +ALDV++QAQI+ L  +LQA  G+A LFI+HD+ +V K++ RV V+  G+I
Sbjct: 475 KLIIADEALSALDVSIQAQIINLFMDLQAERGLAYLFISHDMAVVEKMSHRVAVLYLGQI 534

Query: 238 VEQGGAEETFQHPRHPYTQALLKAEPKPDP 267
           +E G  ++ F+ P H YT+ LL A P  DP
Sbjct: 535 MELGSRQQVFETPTHDYTRRLLSAVPVADP 564



 Score =  179 bits (455), Expect = 2e-49
 Identities = 102/269 (37%), Positives = 158/269 (58%), Gaps = 19/269 (7%)

Query: 270 IAPDAPLVMEANDLKVYFPIKRGILRKTVGHVKAVDGVSIAIRRGETLGVVGESGSGKTT 329
           IA +A  ++    L V F           G  + VD +S  +  G T+ VVGESGSGK+ 
Sbjct: 2   IAANANALLSVEGLSVEF-----------GDSRVVDDISFRVEPGRTVAVVGESGSGKSV 50

Query: 330 LGLALLRLISS------AGPIAFLGKPIDALSFKAMRPLRS-DLQIVFQDPFGALSPRMS 382
             L+ +RL          G I F GK +   S K MR +R  ++ ++FQ+P  +L+P  +
Sbjct: 51  TSLSTMRLADMMGATYPTGKILFEGKDLLKASQKEMRSIRGKEIAMIFQEPMTSLNPVFT 110

Query: 383 VAEIVGEGLLVHQRQ-LSADERDARVVAALADVGLDPETRHRYPHEFSGGQRQRISIARA 441
           + + + E L++H++   +A    A+ +  +  +    E  HRYPH+ SGG RQR+ IA A
Sbjct: 111 IGDQICEVLVLHEKLGKTAAMEQAKQLLDMVRLPDAAELLHRYPHQLSGGMRQRVMIAMA 170

Query: 442 MALEPSFVVLDEPTSALDMIVQAQIVDLLRALQKKRDLTFMFISHDLRVVSALASRILVM 501
           +A  P  ++ DEPT+ALD+ +QAQI++++R LQKK  +  +FI+HD+ VV+ +A  ++VM
Sbjct: 171 LACRPKLLIADEPTTALDVTIQAQILNIMRDLQKKLGMGMVFITHDMGVVAEMADDVVVM 230

Query: 502 RNGKMVEEGPAHDVFEHPKEDYTRALFAA 530
             GK VEEGP  D+F +P+  YTRAL +A
Sbjct: 231 WKGKKVEEGPVKDIFANPQHPYTRALLSA 259