Pairwise Alignments

Query, 442 a.a., hypothetical protein from Xanthobacter sp. DMC5

Subject, 436 a.a., sugar ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score = 56.2 bits (134), Expect = 2e-12
 Identities = 86/372 (23%), Positives = 143/372 (38%), Gaps = 38/372 (10%)

Query: 29  GLAAPAVVRAQGTKTIRFLNAETSIDSIRALKVAAAEY-EKQFGTKVVVDSVPLDGIFTK 87
           GLA      A  T TI  +N    I   R  KV   ++ + +    V+ ++V    + T 
Sbjct: 13  GLALAIPSHAADTVTIATVNNSDMIRMQRLSKVFEEQHPDIKLNWVVLEENVLRQRLTTD 72

Query: 88  VTTSLRGGTPYDIATFAFVGHVLILAAEGQLMPLNELTDKYKWGPNILFP-------VDG 140
           + T    G  +D+ T        +  A+  L PL +L   Y    + +FP       V+ 
Sbjct: 73  IATQ---GGQFDVLTIGTY-ETPLWGAKHWLEPLTQLPPDYD--ADDIFPSVRQGLSVNN 126

Query: 141 KVYWYPYDYNLAWIYYRKDLYEKNKIEVPK--TWDGFLKNSQALNGDGTAGSLFPIGSNG 198
            +Y  P+       YYR DL+++  + +P   TW    + +  L         + +   G
Sbjct: 127 TLYALPFYGESTVTYYRTDLFKQAGLSMPAHPTWSQLGEFAAKLTAKDKGQ--YGMCLRG 184

Query: 199 ATNW-----LSPGFMWAEGVQLFDDKWNIIFDNADMAPRASRYLDFFGDLYKTMPSGTSQ 253
              W     L      A G + FD++W     + +    A+ Y++    L +  P G S 
Sbjct: 185 KAGWGENIALLSTMANAFGARWFDEQWKPELTSPEWTAAANFYVN---TLKQYGPPGVSS 241

Query: 254 ASFGEVLSNFTSGKVA---HTAYAGRIIETIERNNPALADKYGIMPY-MDSAGKHQAVNH 309
             F E L+ F SGK A     + AG    T +++   +AD  G      +   K  +  +
Sbjct: 242 NGFNETLALFNSGKCAIWVDASVAGSF--TTDKSQSKVADSVGFAAAPTEVTDKGSSWLY 299

Query: 310 GYDGWVVLKTPQSDEAMKFMKWFTENQYINFL-HTAPLHFQPP--RLDVYDDARWRAHPL 366
            +   +   +   D A  F+ W T   YI  +     +   PP  R   Y +A  +A P 
Sbjct: 300 AWSLAIPATSKHKDAAKAFISWATSKDYIQLVADKEGITNVPPGTRQSTYSEAYLKAAPF 359

Query: 367 IEKHNAAVEMMK 378
            +     +EMMK
Sbjct: 360 AQ---VTLEMMK 368