Pairwise Alignments

Query, 298 a.a., HTH-type transcriptional activator RhaR from Xanthobacter sp. DMC5

Subject, 281 a.a., AraC-type DNA-binding domain-containing proteins from Enterobacter asburiae PDN3

 Score = 72.0 bits (175), Expect = 1e-17
 Identities = 74/284 (26%), Positives = 116/284 (40%), Gaps = 38/284 (13%)

Query: 29  RELVGTGFVVYRKQHEGSATSRVETPPSGRGLLMGVALSGG---HRRRIFGDGVATAYDF 85
           R+   TG    +   EG A      P      L+G+ LSG    H RR         +  
Sbjct: 9   RQHADTGIETIKAHFEGHAFD----PHWHDSYLVGITLSGTQQFHCRR-------ERHRS 57

Query: 86  APDSCYVRSFSDTYRAD--IETGFDF--------FLLEVSHGALHQTFTEMGLPLAECVS 135
            P   ++    + +  D  +E GF +        +L     G    T     L  A+ + 
Sbjct: 58  QPGDAFLLEPGEIHDGDAPVEGGFTYLTFYLDERWLTHALQGLYESTPGSYSLHFAQTL- 116

Query: 136 CTPGTQDPVLAHLSRALLPMLEAPERQV--PLFLDQVVSAIQTHLATRYHGAAVRIPGGL 193
               T++P L          L   E ++     +D ++S I  H   R      ++P  L
Sbjct: 117 ----TREPQLVRAIGETFSTLHNDEMKIVQQSTMDNLLSRITAHCHWRK-----KLPSQL 167

Query: 194 SPRQFAI-AKERLAAGLDGNVLISDIAAACGVSRGHFIKCFRDETGLTPYQWMLHLRVER 252
                A  A++ L A +  NV +SD+A   G  R    +CF+ E  L P+ W++ LR+ +
Sbjct: 168 QSAAVAHRARDYLYAHIGENVGLSDLARETGTDRFTLTRCFKREFNLAPHAWLIQLRLAK 227

Query: 253 ARNLIVGSRLPLADIAITCGFSDQSHMTRTFTRLTGSAPGLWRR 296
           AR L+     P+ D+A   GF+DQSH+ R F R    +P  +RR
Sbjct: 228 ARQLLARGDQPV-DVAAAVGFADQSHLGRWFQRAYRISPAHYRR 270