Pairwise Alignments

Query, 543 a.a., DNA ligase from Xanthobacter sp. DMC5

Subject, 551 a.a., ATP-dependent DNA ligase (EC 6.5.1.1) LigC from Variovorax sp. SCN45

 Score =  335 bits (859), Expect = 3e-96
 Identities = 230/569 (40%), Positives = 303/569 (53%), Gaps = 47/569 (8%)

Query: 1   MNRFAALLDRMSYEAGRNAKIRLMADYFRSTPDPERGLALAALTGALSFANAKPGLVRTL 60
           M  FAAL   +       AK   +  Y R     +   A+  L G          L+R L
Sbjct: 1   MKAFAALYRELDASTSNLAKQAALQRYLREADAADAAWAVYFLAGGKPRQLVPTKLLRLL 60

Query: 61  IAERAD--PVLFEMSYDYVGDLSETVALMWPRPEGAQPH--APLLSEIVHGLSTFSKVSL 116
             E A     LF+ SYD VGDL+ET+AL+ P P        A  + + +  L   +K S 
Sbjct: 61  AQESAGLPEWLFDESYDAVGDLAETIALLLPPPSEVHDLGLAGWVEQHLLPLRDAAKAS- 119

Query: 117 PRHLADWLDG----LDETGRWALLKLITGSMRVGASARLAKTAVASLGAVTPDEV----- 167
           P  LAD L      L    R    KLITG+ RVG S      A+A++G +    V     
Sbjct: 120 PDQLADRLRAQWRQLAAEERLVYFKLITGAFRVGVSKLQVTQALAAVGGIDAKRVAQRLM 179

Query: 168 GLVWPGLEPP---YEELFAWVEGRGPRPETSN-PAPFRPVMLAHA----IEEADFTTLDP 219
           G    G  P    Y  L A   G     +TS  P PF    LAH     +++ D     P
Sbjct: 180 GYTHIGARPQADDYRALIAPESGMEQVQKTSGQPYPF---FLAHPFNLPLDQFDAVLGPP 236

Query: 220 AAFSAEWKWDGIRVQAVAGTGPDGVRVVRLYSRTGEDISDAFPDMA---EAITFDGAMDG 276
           + +  EWKWDGIR Q V   G     V  ++SR  E +++ FP++A   EA+     +DG
Sbjct: 237 SDWIVEWKWDGIRAQLVKRAG-----VAWVWSRGEELVTERFPELAALGEALPDGTVLDG 291

Query: 277 ELLIVRDGRVEPFNVLQQRLNRKTVTVKMLAEFPAHIRAYDLLVDGTDDLREQPFAARRA 336
           E+ + RDG+V+PF  LQ+R+ RKT+  K+L + P  + AYDLL     DLR  P + RR 
Sbjct: 292 EIAVWRDGKVQPFAELQKRIGRKTLGAKLLRDIPVVLLAYDLLEWEGQDLRALPQSRRRV 351

Query: 337 RLEALVARLQTPRIDLSPMVPFSTWEDLTAARRDPASAGAGADAGAVEGVMIKRADSPYL 396
            L+ LVAR++ P +  SPM+  + W DL   R    + G       VEG+M+KR D+ Y 
Sbjct: 352 LLDELVARMRHPSLLPSPMLEGADWTDLATQREAARTMG-------VEGMMLKRRDAQYG 404

Query: 397 PGRPK--GPWWKWKRDPHTVDAVLMYAQRGHGKRSSFYSDYTFGVWTQSEEGED-VLVPV 453
            GR K  G WWKWK DP ++DAVL+YAQRGHG+R+S +SDYTF VW      ED  LVP 
Sbjct: 405 VGRTKDVGVWWKWKIDPLSIDAVLIYAQRGHGRRASLFSDYTFAVWDSPPGQEDRKLVPF 464

Query: 454 GKAYFGFTDEELKQIDAFVRRATINRFGPVREVVHEKDEGLVLEVAFEGLARSTRHRSGI 513
            KAY G TD E+ ++DA +R+ T+  FGPV+ V       LV E+ FEG+ARSTRH+SGI
Sbjct: 465 AKAYSGLTDAEMARVDAIIRKTTVESFGPVKSV----KPTLVFELGFEGIARSTRHKSGI 520

Query: 514 AMRFPRIARLRWDKPPGEADRLETLEALL 542
           A+RFPR+ R R DKP  EAD L+TL ALL
Sbjct: 521 AVRFPRMLRWREDKPVEEADTLQTLAALL 549