Pairwise Alignments

Query, 543 a.a., DNA ligase from Xanthobacter sp. DMC5

Subject, 552 a.a., putative DNA ligase, ATP-dependent from Pseudomonas putida KT2440

 Score =  314 bits (805), Expect = 5e-90
 Identities = 218/570 (38%), Positives = 295/570 (51%), Gaps = 47/570 (8%)

Query: 1   MNRFAALLDRMSYEAGRNAKIRLMADYFRSTPDPERGLALAALTGALSFANAKPGLVRTL 60
           M  FA L  R+      NAK+  + DYF   P  +   A+  L G          L+R L
Sbjct: 1   MKAFATLFLRLDATTSSNAKLEALRDYFDMAPAEDAAWAVYFLAGGRPRQLVPTRLLREL 60

Query: 61  IAERAD--PVLFEMSYDYVGDLSETVALMWPRPEGAQPH--APLLSEIVHGLSTFSKVSL 116
               A     LFE SY  VGDL+ET++L+ P          A  + + +  L   +   +
Sbjct: 61  ATTLAGLPDWLFEESYQAVGDLAETISLLLPLHADGNEEGLATWVEQHLLPLRGLTPEQV 120

Query: 117 PRHLADWLDGLDETGRWALLKLITGSMRVGASARLAKTAVASLGAVTPDEV-----GLVW 171
            + L      LD       LKLITGS RVG S  L   A+A L  +    V     G   
Sbjct: 121 RQRLPPLWARLDRASLMLCLKLITGSFRVGVSKLLVTRALAQLAGLDAKRVAQRLVGYTD 180

Query: 172 PGLEPP---YEELFAWVEGRGPRPETSNPAPFRPVMLAHAIEEAD--FTTL--DPAAFSA 224
            G  P    Y+ L A             P PF    LAH ++ +   F TL   P+ +  
Sbjct: 181 IGHRPTAASYQRLIAPESADEHNQRGGQPYPF---FLAHPLQVSSDQFDTLLGPPSDWQI 237

Query: 225 EWKWDGIRVQAVAGTGPDGVRVVRLYSRTGEDISDAFPDM---AEAITFDGAMDGELLIV 281
           EWKWDGIR Q V   G      + ++SR  E +++ FP++   A+ +     +DGE+L+ 
Sbjct: 238 EWKWDGIRAQVVKRDGQ-----LWVWSRGEELVTERFPELHGLAQTLPDGVVLDGEILVW 292

Query: 282 RDGR------VEPFNVLQQRLNRKTVTVKMLAEFPAHIRAYDLLVDGTDDLREQPFAARR 335
           + G       V+PF +LQQR+ RKT+  K+L + P  ++AYDLL    +D R +P   RR
Sbjct: 293 KPGETETELAVQPFALLQQRIGRKTLGKKLLNDAPVVLQAYDLLEWQGEDWRSRPQHERR 352

Query: 336 ARLEALVARLQTPRIDLSPMVPFSTWEDLTAARRDPASAGAGADAGAVEGVMIKRADSPY 395
           ++LE LV       + LSP++    W DL   R    S G       VEG+M+K+ ++ Y
Sbjct: 353 SQLEHLVDEHPLAPVLLSPLLQGPDWADLARQREQSRSLG-------VEGLMLKQREALY 405

Query: 396 LPGRPK--GPWWKWKRDPHTVDAVLMYAQRGHGKRSSFYSDYTFGVW-TQSEEGEDVLVP 452
             GR K  G WWKWK DP +VDAVL+YAQRGHG+R+S YSDYTF VW   +      LVP
Sbjct: 406 GVGRTKDMGIWWKWKIDPFSVDAVLIYAQRGHGRRASLYSDYTFAVWDAPAGTPGRALVP 465

Query: 453 VGKAYFGFTDEELKQIDAFVRRATINRFGPVREVVHEKDEGLVLEVAFEGLARSTRHRSG 512
             KAY G +DEE++++DA +R+ T+  FGPVR V       LV E+ FEG+A S RH+SG
Sbjct: 466 FAKAYSGLSDEEMRKVDAIIRKTTVETFGPVRSVT----PTLVFELGFEGIALSRRHKSG 521

Query: 513 IAMRFPRIARLRWDKPPGEADRLETLEALL 542
           IA+RFPR+ R R DKP  EAD L TL+ALL
Sbjct: 522 IAVRFPRMLRWRLDKPVEEADDLATLQALL 551