Pairwise Alignments

Query, 450 a.a., sn-glycerol-3-phosphate-binding periplasmic protein UgpB from Xanthobacter sp. DMC5

Subject, 443 a.a., ABC transporter, substrate binding protein (sugar) from Agrobacterium fabrum C58

 Score = 47.8 bits (112), Expect = 7e-10
 Identities = 84/332 (25%), Positives = 130/332 (39%), Gaps = 50/332 (15%)

Query: 3   RRELLAGTAASAGLALMPGLALAQGAPASAPVQITFWHAMAG----------PLGEELKR 52
           RR  LAGTAA  G A++ G+      PASA V    W   AG          P  E L +
Sbjct: 10  RRAFLAGTAAIGGSAML-GIR-----PASAAVN---WKKHAGTTLEVNLVKSPRSETLIK 60

Query: 53  LCDAFNA-----AQKAVVVEPVFKGTYPETMTAAIAAFRAGKAPHLVQMYEVGTGSMLAA 107
               F              E   +      +++   +F      + VQ  +   G  LA 
Sbjct: 61  YLGEFEELTGIKVNAEATPEQQQRQKVVIELSSGKPSFDVVHLSYHVQKRQFEKGKWLAD 120

Query: 108 GAAVKQVWQLAEETGVRLDPAIYMPAVRSYYSLPDGRMASMPFNSSTPIMWCNKDLFERA 167
            +   +   L + + V  D   +  A   +    DG + S+PF+    I++ NK+LFE  
Sbjct: 121 ISGFLKDPSLTDPSLVEKD---FAEAGMLFAKDSDGVLRSLPFSVDYWIVYWNKELFEAK 177

Query: 168 GLDPERPPETWEQVVTAAE-----ALRSKGGVKVGVTTA-WPTWVHLECFGAIHDVPFAT 221
           GL   + PET+E++VTAAE     A  + G V  G+  A  P W  L        + +  
Sbjct: 178 GL---KYPETFEELVTAAEKITDPATNTYGFVARGLKNANTPVWTSLM-------LGYGA 227

Query: 222 KANGFEG-LDAELVFNSPAMRGHITRLLEMAKAGTFTYAGRGAAGDSLFPAGETGISFNS 280
           K    +G +D E      A + +   + + A  G   +    A   S F  G+ G+ F+ 
Sbjct: 228 KPISADGKIDTESKEAVEAAKLYQRLMTKAAPPGVSGF--NWAEAQSAFLQGKIGMWFDG 285

Query: 281 SGVRAAVVRDARFRPMA----AQLPYDPAVRA 308
            G    +    + R +       +P  PAV+A
Sbjct: 286 VGFAPPIENPEKSRVVGKVGYGVMPKGPAVQA 317