Pairwise Alignments

Query, 358 a.a., Multidrug resistance protein MdtE from Xanthobacter sp. DMC5

Subject, 355 a.a., Efflux membrane fusion protein, RND family from Pseudomonas putida KT2440

 Score =  236 bits (602), Expect = 7e-67
 Identities = 134/354 (37%), Positives = 213/354 (60%), Gaps = 2/354 (0%)

Query: 5   RLMLLLASAAALAGCSEQAAAPAVPPRPVLTAVVQPMSRDVL-EVAGTIEPQVQTDLSFR 63
           RL+L+L++A  L GC+ +  AP V  RPVL+  V+P  +  L   AG+I+ + ++ L FR
Sbjct: 3   RLLLMLSAAVLLVGCTSEEEAPEVI-RPVLSVKVEPQVQSQLGRFAGSIQARFESTLGFR 61

Query: 64  VLGRLLARSVNVGDVVTKDQVVAAIDDTALKLAVRSALAEVANAQAQLTNASGTEDRQRT 123
           V GR+  R ++VG  V     +A +D T  +  +R+A  ++A  QAQ  NA     RQ+ 
Sbjct: 62  VSGRIARRWLDVGAQVKPGDTLATLDPTDQQNQLRAAEGDLAKVQAQWINAQADARRQQQ 121

Query: 124 LLETAATSRATFETAEQGRAAAEASLARAQANLVKAREQLGYAQLKAEFAGVVTAVGAEL 183
           L +    ++A  + A+       A+L +A++ + +AR+QL Y+ L+A+ A V+TA  AE 
Sbjct: 122 LYDRGVGAQAQLDIAQTNLKTTSAALEQARSAVSQARDQLDYSTLRADHAAVITAWQAEA 181

Query: 184 GQVVSPGRSVVTIARPDVREAVVDIGEDFIGDIRIGSPFQLSLQLDGAPVATGRVREIAP 243
           GQ V+ G++VVT+ARPDV+EAV+D+       +  G  F ++ QLD     T  +RE+ P
Sbjct: 182 GQTVTAGQAVVTLARPDVKEAVIDLPIGLAEQLSKGLTFTVASQLDPTINTTASLRELEP 241

Query: 244 QADSVTRTRRVRITLDNPPEAFRLGATVAARPAGNLASDLFIPGSAVFTRDGKSFVWRVT 303
           QAD+ TRTRR R+TL + P AF LG  ++   +  ++    +P SA+  RDGK+ VW + 
Sbjct: 242 QADATTRTRRARLTLASTPAAFHLGTAISVTLSSEVSPRSELPLSALLERDGKTQVWVID 301

Query: 304 AEDRTVHAQEITASAASGDKARVTAGLEAGTRLVTAGVHSLSEGQKVRLAQDAQ 357
            +++TV  +++     + D   ++AG++ G R+VTAGV+SL  GQKV   +DAQ
Sbjct: 302 TQNKTVATRDVALIDRTADSIVLSAGVQPGERVVTAGVNSLKPGQKVTFDEDAQ 355