Pairwise Alignments

Query, 358 a.a., Multidrug resistance protein MdtE from Xanthobacter sp. DMC5

Subject, 367 a.a., RND efflux membrane fusion protein from Pseudomonas putida KT2440

 Score =  141 bits (355), Expect = 3e-38
 Identities = 117/351 (33%), Positives = 169/351 (48%), Gaps = 13/351 (3%)

Query: 15  ALAGCSEQAAAPAVPPR---PVLTAV-VQPMSRDVLEVAGTIEPQVQTDLSFRVLGRLLA 70
           AL  C +  ++P   PR   PV+ AV VQ  S      +G +  + Q+DL FRV G++L 
Sbjct: 16  ALVACGD--SSPGKDPRDTPPVVKAVSVQDASALARSFSGVVVARTQSDLGFRVSGKILQ 73

Query: 71  RSVNVGDVVTKDQVVAAIDDTALKLAVRSALAEVANAQAQLTNASGTEDRQRTLLETAAT 130
           R V+ G  V + Q +  +D   L L  R+    V  A+A+       E R R L+   A 
Sbjct: 74  RLVDTGQTVKRGQPLMRMDPVDLNLQARAQQEAVTAARARAKQTGDDEARYRGLVADGAV 133

Query: 131 SRATFETAEQGRAAAEASLARAQANLVKAREQLGYAQLKAEFAGVVTAVGAELGQVVSPG 190
           S ++++  +    AA+A L+ AQA    AR    YA L A+  GVV    AE GQVVS G
Sbjct: 134 SASSYDQIKAAADAAKAQLSAAQAQADVARNATEYAVLLADADGVVMDTLAEPGQVVSAG 193

Query: 191 RSVVTIARPDVREAVVDIGEDFIGDIRIGSPFQLSLQLDGAPVATGRVREIAPQADSVTR 250
           ++VV +AR   REAVV + E        GS    +L    A     ++R ++  AD +TR
Sbjct: 194 QAVVRLARAGQREAVVYLPETL--RPAPGSTALATLFGKPAQAVPAKLRLLSDAADPITR 251

Query: 251 TRRVRITLDNPPEAFRLGATVAARPAGNLASDL---FIPGSAVFTRDGKSFVWRVTAEDR 307
           T   R  L  P  +  LGAT+      +  +D     IP  A+F     + VW +  +  
Sbjct: 252 TFEARYVLTGPLASAPLGATITLE-IPDTDTDFEAKQIPIGALFDPGNGAGVWVIAGQPA 310

Query: 308 TVHAQEITASAASGDKARVTAGLEAGTRLVTAGVHSLSEGQKV-RLAQDAQ 357
            V  + +   + S +KA V + L AG R+V  G H L +G +V   AQ AQ
Sbjct: 311 KVSWRAVEVLSVSDEKAVVKSDLHAGDRIVALGAHLLRDGVEVMEQAQTAQ 361