Pairwise Alignments

Query, 392 a.a., Multidrug resistance protein MdtE from Xanthobacter sp. DMC5

Subject, 355 a.a., Efflux membrane fusion protein, RND family from Pseudomonas putida KT2440

 Score =  171 bits (433), Expect = 3e-47
 Identities = 117/363 (32%), Positives = 178/363 (49%), Gaps = 19/363 (5%)

Query: 27  LICILALAGLLAACDGQGTAKGAPKDASHPTSESARPALVVRAMAVTVADRATSV--SLT 84
           L+ +L+ A LL  C                TSE   P ++   ++V V  +  S      
Sbjct: 4   LLLMLSAAVLLVGC----------------TSEEEAPEVIRPVLSVKVEPQVQSQLGRFA 47

Query: 85  GDVEAKVLTQLSFRVGGRVTERLVDVGAHVAAGDLLARVDPTEQQADLDAATAAVSAAES 144
           G ++A+  + L FRV GR+  R +DVGA V  GD LA +DPT+QQ  L AA   ++  ++
Sbjct: 48  GSIQARFESTLGFRVSGRIARRWLDVGAQVKPGDTLATLDPTDQQNQLRAAEGDLAKVQA 107

Query: 145 RLRVATSNLDRQSTLLAKGYTTRAAYDQATETAGAAESALETARAQLGTARDALGYAELR 204
           +   A ++  RQ  L  +G   +A  D A        +ALE AR+ +  ARD L Y+ LR
Sbjct: 108 QWINAQADARRQQQLYDRGVGAQAQLDIAQTNLKTTSAALEQARSAVSQARDQLDYSTLR 167

Query: 205 ARAAGIITARTFEVGQVVQPAQSVFTLAEDGTRDAVFDVYETFFRN-SETDRIRISLVSD 263
           A  A +ITA   E GQ V   Q+V TLA    ++AV D+        S+     ++   D
Sbjct: 168 ADHAAVITAWQAEAGQTVTAGQAVVTLARPDVKEAVIDLPIGLAEQLSKGLTFTVASQLD 227

Query: 264 PKVAADGRVREVSPVIDASNGTVRVKVAIDAPADVMALGSPVTGTVTWKATPRIVLPWGA 323
           P +     +RE+ P  DA+  T R ++ + +      LG+ ++ T++ + +PR  LP  A
Sbjct: 228 PTINTTASLRELEPQADATTRTRRARLTLASTPAAFHLGTAISVTLSSEVSPRSELPLSA 287

Query: 324 LASDGGAPAVWRIDPKTRAVSLAKVAVEAFETGSIVISSGLAPGDLVVVDGAKRLSTGQT 383
           L    G   VW ID + + V+   VA+      SIV+S+G+ PG+ VV  G   L  GQ 
Sbjct: 288 LLERDGKTQVWVIDTQNKTVATRDVALIDRTADSIVLSAGVQPGERVVTAGVNSLKPGQK 347

Query: 384 VDY 386
           V +
Sbjct: 348 VTF 350