Pairwise Alignments

Query, 186 a.a., RNA polymerase sigma-H factor from Xanthobacter sp. DMC5

Subject, 193 a.a., RNA polymerase sigma E factor from Pseudomonas putida KT2440

 Score = 80.5 bits (197), Expect = 2e-20
 Identities = 58/186 (31%), Positives = 90/186 (48%), Gaps = 13/186 (6%)

Query: 1   MREPSDEDLMSAIAAGDEAAFRVLCQRYAVRAVAFARRFVGSGTDAEDVAQEALLRVWRA 60
           + +  D+ L+  +  GD  AF +L  +Y  + +    RFV    +A+DVAQEA ++ +RA
Sbjct: 2   LTQEEDQQLVERVQRGDRRAFDLLVLKYQHKILGLIVRFVHDTHEAQDVAQEAFIKAYRA 61

Query: 61  APRWRPDAAFGTWFYRIVINLCLN---ARRRLPFLGLDAAGERAD--PAPDALAGLE--- 112
              +R D+AF TW YRI IN   N   +R R P    D + E A+       L  LE   
Sbjct: 62  LGNFRGDSAFYTWLYRIAINTAKNYLVSRGRRP-PDSDVSSEDAEFYDGDHGLKDLESPE 120

Query: 113 ----RQEEDRALLDAVAALPERQRMAILLTYWEGFSNAHAAEILGTSVSGVETLLVRARR 168
               R E +  +   +  LPE  R A+ L  ++G S    A ++   V  V + + RAR 
Sbjct: 121 RSLLRDEIEGTVHRTIQQLPEDLRTALTLREFDGLSYEDIASVMQCPVGTVRSRIFRARE 180

Query: 169 SLRLSL 174
           ++  +L
Sbjct: 181 AIDKAL 186