Pairwise Alignments

Query, 599 a.a., Single-stranded-DNA-specific exonuclease RecJ from Xanthobacter sp. DMC5

Subject, 602 a.a., single-stranded-DNA-specific exonuclease from Agrobacterium fabrum C58

 Score =  652 bits (1682), Expect = 0.0
 Identities = 349/592 (58%), Positives = 411/592 (69%), Gaps = 3/592 (0%)

Query: 8   RLFLDVARSATGRTWRERLDVRGGQTALAMAQRFGISELLARVLAARNVGLDEVERYLDP 67
           R FL V RSAT + W  RLD  G   ALAM+Q   I EL+ARVLA R VG+D+   +LDP
Sbjct: 12  RAFLSVERSATEQRWVSRLDQAGQNRALAMSQIHAIPELIARVLAGRGVGVDDALAFLDP 71

Query: 68  SIRTLLPDPDTLTDMPAAVARLARAVTTGEQVAVFGDYDVDGACSTALMVGVLQAGGLDP 127
           +IR+L+PDP  LTD   A  RL RA+ TGE+VA+FGDYDVDGA S+AL    L   GL P
Sbjct: 72  TIRSLMPDPHMLTDCEKAAERLVRAIETGEKVAIFGDYDVDGAASSALTYRFLAHFGLTP 131

Query: 128 FFHIPDRIFEGYGPNVPAIEQLAARGVTLLVTVDCGTTSLEPLAAAKRLGMDVVVIDHHQ 187
             +IPDRIFEGYGPN  A++QLAA G TL+VTVDCG+TS E L AAK  G DVVVIDHHQ
Sbjct: 132 EIYIPDRIFEGYGPNPAAMQQLAANGATLIVTVDCGSTSHESLQAAKDAGTDVVVIDHHQ 191

Query: 188 AGETLPPATAIVNPNREDDLSGLGHVCAAGLAFVVAVGLVRALRQSGHFNAERPAPDLLE 247
            G  LPPA A+VNPNREDDLSG GH+CAAG+ F+V V  +R L+     N +    DLL 
Sbjct: 192 VGTELPPAVALVNPNREDDLSGQGHLCAAGVVFLVMVATLRLLKD--RRNRQAFTLDLLS 249

Query: 248 ALDIVALATVADVVPLIGLNRAFVAKGLIAMRRRTRIGLTALMDAARLDGPPRPFHLGFL 307
            LDIVALATV DVVPL GLNRA+V KGLIA R     GL AL   A L GP  P+H GFL
Sbjct: 250 LLDIVALATVCDVVPLKGLNRAYVVKGLIAARHMNNAGLAALFKKAGLGGPVTPYHFGFL 309

Query: 308 IGPRINAGGRIGEATLGARLLLTQDPAEARGIAAELDRLNAERQEVERAILAAAEAEAHA 367
           IGPRINAGGRIG+A LG+RLL   D  EA  IA +LD LN ERQ +E A+LA AEAEA  
Sbjct: 310 IGPRINAGGRIGDAALGSRLLTIDDTTEAEVIAEKLDELNRERQAMEAAMLAEAEAEALY 369

Query: 368 ALGISEEGAVVVVSGEGWHPGVVGLVAARLKERFQRPAFAIAFN-GETGTGSGRSIPGVD 426
             G      V+V + E WHPG+VGL+A+RLK+RF+RPAFAIAF+    GTGSGRSI G D
Sbjct: 370 EYGDGSGAGVIVTARENWHPGIVGLLASRLKDRFRRPAFAIAFDPSGKGTGSGRSINGFD 429

Query: 427 IGRAVRGAVESGLLVKGGGHAMAAGLTVERRQLGALRAELEQRLAPDVERARAEGTLSID 486
           +GR VR AVE+GLLVKGGGHAMAAGLTVER  LG LR   E+  A  V        L ID
Sbjct: 430 MGRMVRAAVETGLLVKGGGHAMAAGLTVERANLGKLRTFFEEAAAKTVNELVESSVLKID 489

Query: 487 GALTARGATLDLVETVSRAGPFGAGNPEPVFAFPGHRISYVESFGAGHVRARISSPDGTT 546
           GA+ A GATL LV+ + +AGP+G+G+ +P+FA P HR+  V   G  HV+  + + DG+ 
Sbjct: 490 GAIGASGATLQLVDQLEQAGPYGSGHSQPIFAVPAHRLRDVRLVGTAHVKITLEAMDGSR 549

Query: 547 LKATAFRCAEEPLGRALLAARGRNLHVAGCLDIDTWQGETRVALRIRDVAEA 598
           L   AFR AE PLG+ LL ARGRN+HVAG +  D WQG+ RV LR+ D A A
Sbjct: 550 LDGIAFRAAEAPLGQMLLNARGRNIHVAGTVGADLWQGQRRVQLRVLDAAFA 601