Pairwise Alignments

Query, 337 a.a., Dipeptide transport system permease protein DppB from Xanthobacter sp. DMC5

Subject, 355 a.a., oligopeptide ABC transporter permease from Agrobacterium fabrum C58

 Score =  230 bits (586), Expect = 5e-65
 Identities = 123/326 (37%), Positives = 190/326 (58%), Gaps = 2/326 (0%)

Query: 11  TAVPSLIGVVIVTFLLTRVLPGDTAAYFAGPAATPQAIAEIRTKLGLDKSLPAQFADYVS 70
           T + + +G++ VTF + RV+P D A    G  A    +  +R +LGL+  L  QF  Y+ 
Sbjct: 30  TVITTFLGLMAVTFFIGRVVPIDPALAIVGDRAPAHVVERVREQLGLNLPLWQQFFLYLK 89

Query: 71  ALAHGDLGSSLSTGQPVATEIASRLPASAELTLAGLVLALLIAVPFGIMAAVRQGSWIDH 130
               GD G S+ T  PV  +I    PA+ EL   G ++  +  +P G++AAV++GS+ D 
Sbjct: 90  QALSGDFGISVLTTNPVMEDIKRVFPATIELATIGTIIGAVFGIPLGVLAAVKRGSFADQ 149

Query: 131 ACRIITTAGVSLPVFFTGLLLVYVFYFKLGWAPAPLGRLDVFFSAPET-VTGFYLIDSLI 189
             R+I   G S+P+F+ GLL + VFY +L W   P GR+D+ +    T VTGF+LID++ 
Sbjct: 150 VVRVIGLIGYSVPIFWLGLLALLVFYARLQWVAYP-GRMDIVYEFTFTPVTGFFLIDAIW 208

Query: 190 ARDFETFRAALAQLAVPAITLAIFALAPIARMTRASMLAVLSSEFVRTAKAAGLTDYTVI 249
            R ++        + +PA  L  F+LA I+RMTR+ ML  LS E++  A+A GL++  +I
Sbjct: 209 QRQWDVLWDLFRHIILPASLLGYFSLAYISRMTRSFMLNELSQEYIVAARAKGLSETRII 268

Query: 250 ITYAFRNAMLPVVTTLGMVFSFLLGANVLVEKVFAWPGIGSYAVEALITSDYAPVQGFVL 309
             +A RNA +P+VT + + ++ LL  +VL E +FAWPG+G Y   +L  +D   V G  +
Sbjct: 269 WLHALRNAAVPLVTVIALSYAGLLEGSVLTETIFAWPGLGLYITNSLQNADMNAVLGGTI 328

Query: 310 AMAILYVILNLLIDLAYGIIDPRARS 335
            +  ++V +NL  DL Y  +DPR RS
Sbjct: 329 VIGAIFVGINLFSDLLYRTLDPRTRS 354