Pairwise Alignments

Query, 295 a.a., putative D,D-dipeptide transport system permease protein DdpC from Xanthobacter sp. DMC5

Subject, 290 a.a., putative Opine ABC transporter, permease protein from Pseudomonas putida KT2440

 Score =  215 bits (548), Expect = 8e-61
 Identities = 112/295 (37%), Positives = 168/295 (56%), Gaps = 8/295 (2%)

Query: 1   MTLATADTQKAPGGLAATLAHARYVISDNPVTGIAFGMFLVLVVCATFGPFIVPYDPLAS 60
           MT  TA     P     TL  A +    N ++ I  G+ +++V+ A F P I PYDPL  
Sbjct: 1   MTTLTAPLVSKP----TTLWQALF---QNRLSWIGIGLLVMIVLVALFAPLIAPYDPLQQ 53

Query: 61  DTAAALQPPSAAHWFGTDNLGRDIFSRVVVASRLDMAIAIFSVALVFAVGGVAGIASGFF 120
           + A  L+PPSA  W GTD  GRD+ SR++  +R+ + +   +V +   VG   G+ +G+ 
Sbjct: 54  NIAYRLEPPSAEFWLGTDTYGRDVLSRLIYGTRVSLLVGFVAVMIAMVVGSALGVIAGYV 113

Query: 121 GGWTDRIIGRISDTIMAFPLFVLAMGIVAALGNTVTNIVIATAIINFPLYVRVAKSEAAI 180
           GG TDR+I    D +++FP  +L + + A LG ++ N++IA AI     +VR+A++    
Sbjct: 114 GGITDRLITGFVDVLLSFPTLLLGLMVAAMLGASLENLIIAIAITEIAPFVRIARAPTIA 173

Query: 181 RRNAGYVQAARLTGNSEWRILLTTILPNIMPIMMVQMSLTMGYAILNAAGLSFIGLGVRP 240
            +   +V+A R  G    R++   ILPN++  ++V  +L M  AI   A LSFIGLGV P
Sbjct: 174 LKQRDFVEAGRSLGYGPGRLMTVHILPNMISEVLVLGALWMATAIRTEASLSFIGLGVPP 233

Query: 241 PTPEWGIMVAEGSAYIVSGEWWIALFPGLALMFAVFCFNLLGDGLRDIVDPQRRT 295
           P P WG M+ EG   I+   WW+ +FP LA++  V   +LLGD LRD  DP+ R+
Sbjct: 234 PAPTWGSMIREGFENILDA-WWLTVFPSLAILLTVLALSLLGDALRDANDPKTRS 287