Pairwise Alignments

Query, 281 a.a., putative D,D-dipeptide transport system permease protein DdpC from Xanthobacter sp. DMC5

Subject, 290 a.a., putative Opine ABC transporter, permease protein from Pseudomonas putida KT2440

 Score =  215 bits (547), Expect = 1e-60
 Identities = 108/256 (42%), Positives = 157/256 (61%), Gaps = 1/256 (0%)

Query: 26  VVLVAIAVLAPWITPYDPIASNVPAALQPPSAAHWAGTDQLGRDIFSRLIAATRLDLGIA 85
           V++V +A+ AP I PYDP+  N+   L+PPSA  W GTD  GRD+ SRLI  TR+ L + 
Sbjct: 33  VMIVLVALFAPLIAPYDPLQQNIAYRLEPPSAEFWLGTDTYGRDVLSRLIYGTRVSLLVG 92

Query: 86  VSAVLLSFVAGATIGALCGYAGGRVDRSVGRLVDVLMAFPLFVLAMALVAALGNRVENIV 145
             AV+++ V G+ +G + GY GG  DR +   VDVL++FP  +L + + A LG  +EN++
Sbjct: 93  FVAVMIAMVVGSALGVIAGYVGGITDRLITGFVDVLLSFPTLLLGLMVAAMLGASLENLI 152

Query: 146 IATALINLPFYIRFARAEVNVRRHAGWVEAARAGGESHATIVLAYLLPNILPAMAVQISL 205
           IA A+  +  ++R ARA     +   +VEA R+ G     ++  ++LPN++  + V  +L
Sbjct: 153 IAIAITEIAPFVRIARAPTIALKQRDFVEAGRSLGYGPGRLMTVHILPNMISEVLVLGAL 212

Query: 206 NLGWAILNAAGLSFLGLGVQAPTPEWGIMVAEGARFIGNGQWWLVAFPGLALMLAVLCFN 265
            +  AI   A LSF+GLGV  P P WG M+ EG   I +  WWL  FP LA++L VL  +
Sbjct: 213 WMATAIRTEASLSFIGLGVPPPAPTWGSMIREGFENILDA-WWLTVFPSLAILLTVLALS 271

Query: 266 LLGDGLRDILDPRMRT 281
           LLGD LRD  DP+ R+
Sbjct: 272 LLGDALRDANDPKTRS 287