Pairwise Alignments

Query, 410 a.a., hypothetical protein from Xanthobacter sp. DMC5

Subject, 400 a.a., Branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein from Pseudomonas putida KT2440

 Score = 94.0 bits (232), Expect = 7e-24
 Identities = 93/412 (22%), Positives = 172/412 (41%), Gaps = 22/412 (5%)

Query: 2   KRMLARTALAL-AVGGLSLAATSAARAQFTDGVVRIGVLNDQNGIYADMAGPGSVAAAKI 60
           +R L +  LAL A+G L L A  A    F D  +    L   +G +A   G  +   +++
Sbjct: 3   RRTLLKAGLALGALGSLPLGAHRA----FADQPLTFYGLKSMSGAFASY-GKYADMGSRL 57

Query: 61  AVEEIGGKIGNTPIEIIVGDHQNKPDIGLNIARKWLDVDGVDMIADIPNSSISLALVQLV 120
           A+ E    +G+ P++  V D +      +   ++ +  DG         SS +LA+ + +
Sbjct: 58  AIAEHPQLLGH-PLKYKVIDTEGNAGKAVRKVQEAIGQDGARFFQGCTLSSSALAVSKEI 116

Query: 121 KEKNKVAVIATSNSNRLTGDSCTPNHVHWTLDNYSLAKSTATEVLKS--GGSSWYFVTVD 178
            +   V +     ++ +TG  C  +   W++  Y   + T   + +       WY +T  
Sbjct: 117 HKAGGVFMTPVG-ADEITGKDCNASTFRWSVPTYGAIRETLVPMSRQLPQAKRWYTITPQ 175

Query: 179 YAFGHDMEREAGQIVKNAGGTVVGSVRHPLGSSDLSSFLLQAQASGAKVIGFANSGADFT 238
           Y FG  +   A ++    G   +G+  H L   + S +L  A A+   V+   N G+  +
Sbjct: 176 YVFGDALLDNARKVFAELGVEHIGNSYHSLQEQEFSGYLTNAIAAKPDVLVLLNFGSQAS 235

Query: 239 NSMKQSAEFGLTQGKQKLAALAVYLTDIKSLGLTSGQGLYLSEPFYWDLNDQTRAFAKKF 298
           N+++Q+  FG+    + L   +  L   + LG    +G+YL   ++  ++          
Sbjct: 236 NALRQAVNFGIKDRMKVLMVWSAGLDQFQELGSDVLEGVYLGAQYWHQVDTPLNKLLVAA 295

Query: 299 SEKMNGAMPTSFQAGVYSGVLHYLKAVQALNSDADGRAIVAKMKDL----PTDDLAFGKG 354
           + K  G  P    A  Y G    L+A+    S  DG A+ A ++ +    PT +     G
Sbjct: 296 TRKAYGINPNYPLAADYIGTKVMLEAIVKAGS-LDGAAVSAALQGMRFQGPTGEELIRPG 354

Query: 355 YVRADGRKIHPMYLFKVKSPAESKGPWDLYTKIGETPADQAFKPLEAGGCAL 406
               D + +   YL + K   + +   DL   I    + ++F  ++  GCAL
Sbjct: 355 ----DHQVLKDYYLLRGKPQGQMRDEDDLAEVIS---SGRSFVEVDHTGCAL 399