Pairwise Alignments

Query, 832 a.a., Ribonuclease R from Xanthobacter sp. DMC5

Subject, 857 a.a., exoribonuclease R from Pseudomonas putida KT2440

 Score =  362 bits (930), Expect = e-104
 Identities = 269/795 (33%), Positives = 401/795 (50%), Gaps = 59/795 (7%)

Query: 61  MPTKAQVLAFIATQNGEVGKREIARAFGLSAAQKVE-LKQLLRDLSAEGTVSRERRRLHV 119
           +P++  +L  +A +     + E+A+ FGL    ++E L++ LR +  +G +   RR  + 
Sbjct: 22  IPSRELILQRLADRGEPAAREELAKEFGLYEEDQIEALRRRLRAMERDGQLIYTRRGTYA 81

Query: 120 PGALPAEVLADIVSRDGDGELVAVPVEWDSEAQGEAPHILVQVPRRASGPAPGLSDRVLL 179
           P     +++   VS   DG    +P +   +        L   P +      G  DR L 
Sbjct: 82  P-VDKLDLICGRVSGHRDGFGFLIPDDGSED--------LFLSPSQMRLVFDG--DRGLA 130

Query: 180 RIVEGSIEHAVPHVGRVIKVLEKARKQTMGIFRAAPQGGGGRIIPIDKKQLGRELQVPPG 239
           R+    ++      G +++V+ +A +  +G  R   +GG G + P D  ++ +E+ V  G
Sbjct: 131 RV--SGVDRRGRREGVLVEVISRAHESVVG--RYFEEGGIGYVTP-DNPKIQQEVLVTAG 185

Query: 240 AEHEAEDGDLVTVELMRQRVFGL-PTARVKEKLGSLKSEKAVSLIAIHAHGIPNAFPDVV 298
               A+ G  V +++         P   V E +G+  +      +A+ ++ IP+ +P+ V
Sbjct: 186 RNGGAKIGQFVEIKITHWPTPRFQPQGDVVEVIGNYMAPGMEIDVALRSYDIPHVWPNDV 245

Query: 299 LKEAEAAK-QITVRGRE---DWRDLPLVTIDPPDAKDHDDAVHAAADE-----DGGFIVT 349
           +KEA   + ++  + +E   D R LP VTID  DA+D DDAV+           GG+ + 
Sbjct: 246 VKEARKFRSEVEEKDKEKRVDLRHLPFVTIDGEDARDFDDAVYCEPLGKLRLFSGGWRLY 305

Query: 350 VAIADVSAYVRPGTALDREALIRGNSVYFPDRVVPMLPERISNDLCSLRPDEDRPALAVR 409
           VAIADVS+YVR G+ALD EA  RGNSVYFP+RVVPMLPE +SN LCSL P  DR A+   
Sbjct: 306 VAIADVSSYVRLGSALDVEAQQRGNSVYFPERVVPMLPEELSNGLCSLNPHVDRLAMVCE 365

Query: 410 LVIGGDGRKRSHSFHRILMRSAGKLAYAQAQNAIE-GRTDD---ITDPLVEGV--LKPLY 463
           + +   G+   + F+  ++ S  +L Y +  + +E  RT +   + +   E V  LK LY
Sbjct: 366 MTMNKAGQMVDYQFYEGVIHSHARLTYNKVSSMLEHSRTREGKALREEYKEVVPDLKNLY 425

Query: 464 AAYACVKKARDARQPLDLDLPERKIILKPDGTVDRVVVPERLDAHRLIEEFMILANVAAA 523
             Y  + +AR  R  +D +  E +II   +  +  +    R DAH+LIEE M+ ANVA A
Sbjct: 426 NLYKVLVEARHTRGAIDFETQETRIIFGEERKIAEIRPTVRNDAHKLIEECMLAANVATA 485

Query: 524 ETLEEKKTPLIYRVHDGPTLAKLSALRDFLKTLDIGLPKTDQVRPSHFNRILEEVKDTDA 583
           E L++   P +YRVHDGP   +L  LR FL  L + L K     P  +  +L  +     
Sbjct: 486 EFLQKHGVPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKDPSPKDYQALLASIAGRPD 545

Query: 584 APLVNQVILRSQSQAEYASENYGHFGLNLRRYAHFTSPIRRYADLIVHRGLVRALGVGKD 643
             L+  V+LRS SQA Y++EN GHFGLN   Y HFTSPIRRY DL+VHR  +R++   K 
Sbjct: 546 FHLIQTVMLRSLSQAVYSTENNGHFGLNYEAYTHFTSPIRRYPDLLVHRA-IRSIIRSKV 604

Query: 644 GLP------------------DDATVESLGEVAAAISVTERRAMAAERETVDRLIAHHLA 685
             P                  D+ T+E LGE     S+TERRA  A R+ V+ L    + 
Sbjct: 605 DTPHVKRAGAMSIPKARIYPYDENTLEQLGE---QCSMTERRADEATRDVVNWLKCEFMK 661

Query: 686 DQIGATFNGRITGATKAGLFVALDITGADGFIPASTLGQDYYRYDEVRQALVGDRTGEMH 745
           D++G TF G IT  T  GLFV L     +G +  S L  DYY +D V   L G+RTG   
Sbjct: 662 DRVGETFPGVITAVTGFGLFVELTDIYVEGLVHVSALPGDYYHFDPVHHRLAGERTGRSF 721

Query: 746 RIGDRVEVKLVEAAPVAGALRFELLSEGSYVKGPRGGGPQRRGAPSGFAGRPGKSLPGRA 805
           R+GD +EVK++        + FE+  +         G  QR  AP         +   +A
Sbjct: 722 RLGDTIEVKVMRVDLDERKIDFEVSEK---TLAAPIGRKQRGAAPVAEKAEQQPATEAKA 778

Query: 806 KPGKSGSGKSGSGKA 820
            P K  S KS + +A
Sbjct: 779 TP-KPRSRKSEASEA 792