Pairwise Alignments

Query, 626 a.a., hypothetical protein from Xanthobacter sp. DMC5

Subject, 355 a.a., 23S rRNA pseudouridine 2605 synthase from Pseudomonas putida KT2440

 Score =  157 bits (396), Expect = 9e-43
 Identities = 124/368 (33%), Positives = 184/368 (50%), Gaps = 41/368 (11%)

Query: 30  ERVAKVVARAGLGSRREIEEWIEAGRVAVNGEVLTSPAVTVTPADAITIDGEPLPERERT 89
           E++ KV+AR G+GSRR++E WI  GR+ VNG V  +    V   DAI +DG+ +   E  
Sbjct: 17  EKLQKVLARIGVGSRRDVEAWISQGRIKVNG-VEATLGQRVDLHDAIAVDGKLIKREEAA 75

Query: 90  ----RLFLYHKPKGVVTTNRDPEGRTTLFEILPKGLP-RLVSVGRLDLNSEGLLLLTNDG 144
               R+ +Y+KP G + T  DPEGR T+F+ LP+    R +++GRLD+N+ GLLL T DG
Sbjct: 76  EATRRVIMYNKPDGEICTRDDPEGRPTVFDRLPRPKEGRWINIGRLDINTTGLLLFTTDG 135

Query: 145 GLARVLELPETGWLRRYRVRANGEIDQAKLDTLIKGITVDGVEYGPIE-AELDRV---QG 200
            LA  L  P     R Y VR  GE+D   ++ L  G+    +E GP +  ++ +    +G
Sbjct: 136 ELANRLMHPSYEMDREYAVRVRGEVDDEMIERLKAGVM---LEDGPAKFTDIQKAPGGEG 192

Query: 201 ANAWITVSLREGKNREIRNVFGALGLAVNRLIRVSYGP-FQLGEIPEGSVEEVRTRVLRD 259
            N W    + EG+NRE+R ++ + G+ V+RL RV +GP F   ++P G   E+ T+   D
Sbjct: 193 FNHWYHCVVMEGRNREVRRLWESQGMVVSRLKRVRFGPVFLNSDLPMGRWREM-TQGEID 251

Query: 260 QIGADLAAAAGADFTGLLVEREIEEAPVRPAYRPAGRRQAEADKAGGLKVPARRASRERE 319
            + A++     A     L  ++  E   R + RP GR     ++   L+     A+    
Sbjct: 252 ILAAEVGLQPVALPAMKLKAKDKMERLQRKSTRPLGR----GERVRNLRPAHEGAATGER 307

Query: 320 DFDAPVEDIIRPAAPRVRRRASEEHGTERVGTVADRKGRSVKVERVRAPKDEAPRRARSA 379
               P E+     APR   R S         TVA+R     K  R   P  + P      
Sbjct: 308 PARQPREE-----APRKPTRGS---------TVAERPSEMRK--RPGKPDGDKP------ 345

Query: 380 AGEGEGRP 387
           AG G G+P
Sbjct: 346 AGRGRGKP 353



 Score = 38.1 bits (87), Expect = 6e-07
 Identities = 37/108 (34%), Positives = 44/108 (40%), Gaps = 35/108 (32%)

Query: 468 SRPEGRGGDVGDRPTRSRSFGGDRPEGDRPTRRPRPEGRGGDFGDKPARARSFGGDKAEG 527
           +RP GRG    +R    R        G+RP R+PR E        KP R  +        
Sbjct: 283 TRPLGRG----ERVRNLRPAHEGAATGERPARQPREEAPR-----KPTRGSTVA------ 327

Query: 528 ERPARARPRPEGRGDFGDRPPRERSYGDKPAGRTRSFEDRPGGGKPAG 575
           ERP+  R RP G+ D           GDKPAGR        G GKP G
Sbjct: 328 ERPSEMRKRP-GKPD-----------GDKPAGR--------GRGKPRG 355



 Score = 32.0 bits (71), Expect = 5e-05
 Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 9/84 (10%)

Query: 389 RRSRDEGAAERPRREGRPSFRDDAPRGRGPREEKEDFRRRPTRSGGGDERPRRYEDDGGV 448
           + +R  G  ER R   RP+    A   R  R+ +E+  R+PTR     ERP         
Sbjct: 281 KSTRPLGRGERVRNL-RPAHEGAATGERPARQPREEAPRKPTRGSTVAERPSEMR----- 334

Query: 449 KRSGPRREGDRPQSDRPFRSRPEG 472
           KR G + +GD+P      R +P G
Sbjct: 335 KRPG-KPDGDKPAGRG--RGKPRG 355