Pairwise Alignments

Query, 241 a.a., Ribosomal RNA small subunit methyltransferase E from Xanthobacter sp. DMC5

Subject, 235 a.a., Ribosomal RNA small subunit methyltransferase E from Pseudomonas putida KT2440

 Score = 52.0 bits (123), Expect = 1e-11
 Identities = 65/234 (27%), Positives = 94/234 (40%), Gaps = 20/234 (8%)

Query: 15  ADLAEGAEIVLEREAAHYVANVIRLGVGEDILL--FNGRDGEWRATRIAGGKREVRLEVL 72
           AD      +VL      ++  + R+ VG+++ +   NG  G  RAT +   K E  LEV 
Sbjct: 9   ADFVSANRVVLADRRFTHMQEIHRVAVGDNLRVGRINGLMG--RATVLRLEKHEAELEVA 66

Query: 73  RETRAQPPAPT-LEYAFAPLKHARLDYMVQKAVEMGAGILS-----PVITRYTQVSRVNV 126
            +   QPPA   L    A  +   L  + Q    +G   L       V   + Q   +  
Sbjct: 67  FDQ--QPPAKLPLTLVLAVPRPKMLRRLFQTVATLGVPRLILLNSYKVEKSFWQTPFLQP 124

Query: 127 ERMTANAIEAAEQCGILSLPHVEEPRPLDSWLASLAEDRLLVFCDEASA---DEDPIAAL 183
           + +  N I   EQ     LP V     ++       EDRL               P  A 
Sbjct: 125 DTIRENLILGLEQARDTVLPEVI----IEKRFKPFVEDRLPTIAAGTLGLVGHPGPYPAC 180

Query: 184 KQARPGPVSVLIGPEGGFSPEERTRIAPRGLT-LSLGPRILRADTAAVAALALV 236
            +A    V++ IGPEGG+ P E   +   GL  + LG RILR +TA  A L+ +
Sbjct: 181 PRAVEQAVTLAIGPEGGWIPYEVDLLGKAGLAPVQLGDRILRVETAVTALLSRI 234