Pairwise Alignments

Query, 813 a.a., outer membrane usher protein from Pseudomonas simiae WCS417

Subject, 831 a.a., Type 1 pili subunit FimD from Pseudomonas putida KT2440

 Score =  197 bits (501), Expect = 2e-54
 Identities = 217/781 (27%), Positives = 339/781 (43%), Gaps = 78/781 (9%)

Query: 63  SLLMQAPRFTQGRHALNLTVNGQRRGRVDVSI----DQHGATCFDPPLLN--AAQLVTPS 116
           S+L        GR+ + + VN +  G+ ++      D     C    LL     +L   +
Sbjct: 60  SMLTSDQGLAPGRYRVEVQVNLEPAGQHELDFQPGPDGELQPCLPARLLGEWGMRLDALA 119

Query: 117 SGPAEESRCYDFLQQYPQTVIEHDPANLNLNLVVPTQALRPVTQ---DISGYQTGGFAAL 173
           +   + S C D L   P   I   P  L+L + +P  ++R  T    D S + +G  AA 
Sbjct: 120 NPEDQASACLDLLTVVPGAQIVFTPTELHLAISIPQISMRRNTANQVDPSRWDSGINAAF 179

Query: 174 LNYDVTGLYNHYGDDASRFGSANTEV--GFNAGDWIVRSRQVQTWQDSTSSTTH---LDA 228
           +NY  + L N     + R+ S +  +  G N G+W  R R  Q+W+  +   T       
Sbjct: 180 INYQASTL-NGRNRSSGRYTSNDLYLNSGINLGEW--RLRSTQSWRQGSQGKTEWTRAQT 236

Query: 229 YAQRTFASHQAVLQAGQINLYNPVLAGAQITGVQVLTEQALQDQNQ---GATIDGIANGP 285
           YAQR      A L  G+      V     I+GV+V ++  +   NQ      I G+A   
Sbjct: 237 YAQRDIPGTLANLTIGETFTDREVFRSVPISGVRVASDMGMLADNQRGYAPIIRGVAQSR 296

Query: 286 AQVEVRQNGTLIHSTVVPAGPFSLSSVPRLNGRSDVEVTVKESTGEERRFTVPAAMLGLG 345
           A+VE+ Q+G  I+ST V AGP+++  +    G  ++EV V E+ G+ RRF  P + +   
Sbjct: 297 AKVEIWQHGYPIYSTYVSAGPYAIDDLSTA-GSGELEVVVTEADGQVRRFIQPYSTMS-N 354

Query: 346 LPAPG---YSVAAGRVRNIGDGPGAEPW----VVSAGWSASPHPQVSFGSGLLAAEAYRS 398
           L  PG   YS   GR     D      W     V + W  + +       GL+A+E YR+
Sbjct: 355 LLRPGVWRYSATVGRYNPSSDLETPLLWQGTLAVGSYWDTTVY------GGLMASEFYRA 408

Query: 399 AGLS-------LGLLPWQDSQVQVAVVASEASRRTQERGVQTDLSWSQKLSERWAFTAAN 451
             L        LG + +  +Q      AS A     ER VQ     S  L    AFT   
Sbjct: 409 GNLGFSKDLGHLGAVAFDVTQ------ASSAIDNAHEREVQGS---SYALKYAKAFTTQT 459

Query: 452 SWR-------TLGYRDLSESTYVVDTREQQRTRYRDQQSATTSWSHPWLGAFSA---GVS 501
           + R       T GYRD  E   VV  R Q  T    ++S   +  H  LG  S+    +S
Sbjct: 460 NLRFAGYRYSTQGYRDFDE---VVRQRSQDTTFSGSRRSRLEASVHQSLGRTSSLTLTLS 516

Query: 502 RSSSFQGDSSSRALA-SWGTQIAGMSVSATAEWHMGGRRYNDDSLYLTVSLPLGESRRGR 560
           +   ++ +++ R    ++ TQ  G+  +  A   +  R  ND    L+V++PL    R  
Sbjct: 517 QQDYWRSNATQRQYQFNFNTQHRGVGYNLFASQSLTDRYGNDRQFGLSVTVPLHFGHRAN 576

Query: 561 AWV---RNSGGEHRTGLGLNEQINDHLAYRVGVEHDTRDREVES-SLGVSALPFYSQLDF 616
           A      N+ G  +            L+Y   +  D   R+  + SLG  A   Y+ +  
Sbjct: 577 ATFDLQHNANGYSQRATLSGSDSARALSYSTSLSRDEHARKTAALSLGHQAP--YASVSA 634

Query: 617 NYTRSDAERSSYQGGARGAVVLHSDGLTFSPYPVRDTFAVLSVGDMAGIKVNTPSGPVWT 676
            YT +D  RS     A GAV+LH+DGL F  Y + DT A++ V  +A + +   +G   T
Sbjct: 635 GYTEADNYRS-LSLNASGAVLLHADGLEFGRY-LGDTAALIEVPGVANVGLQNATG-TRT 691

Query: 677 DWQGQAVAPQLSAYGRSPLEVQTRSLPRNADIHNGLAVVSAGRGAVDRIEFGVSLTRRAL 736
           + +G A+ P L  Y  + + ++T  L  + +I NG+A V   +GAV +  F      R +
Sbjct: 692 NSRGYALLPYLQPYRTNSVVLETDRLDPDVEIDNGIAQVVPRQGAVVKHRFEARRVSRLV 751

Query: 737 LTL-DT---PMPRGSTVTTEDGEFITLVQEGNQVFLSDVLDTRSLWIKAADQPRCHLRFE 792
           LTL DT   P+P G+ V  E+G  + +V +   V L++    + L +   +QP    +  
Sbjct: 752 LTLHDTQGQPLPFGAQVLAENGTQLGMVGQAGLVMLTNPSQEQPLQVSWGEQPNAGCQVH 811

Query: 793 L 793
           L
Sbjct: 812 L 812