Pairwise Alignments

Query, 393 a.a., amino acid ABC transporter permease from Pseudomonas simiae WCS417

Subject, 221 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score = 87.4 bits (215), Expect = 3e-22
 Identities = 57/167 (34%), Positives = 94/167 (56%), Gaps = 11/167 (6%)

Query: 227 IPALCALIFGAPLHWEMPKLQGFNFVGGWVLIPELLALTLALTVYTAAFIAEIVRSGIKS 286
           IP L  L++    ++ +P L G +F   W       A  +ALT++ AA++AEIVR+GI+S
Sbjct: 65  IPVLVILVW---FYFAVPILTGISFHPFW-------AALMALTLHIAAYVAEIVRAGIES 114

Query: 287 VSHGQTEAARSLGLRPGPTLRKVIIPQALRVIIPPLTSQYLNLAKNSSLAAGIGYPEMVS 346
           +  GQ  AA +LG+     +RKV++PQAL  ++P   S      K++++A  I  PE++ 
Sbjct: 115 IRPGQIRAALALGMSRAQIVRKVVLPQALVRMLPAFGSVLSITIKDTAIATVIAVPELMK 174

Query: 347 LFAGTVLNQTGQAIEVIAITMSVYLAISISISLLMNWYNKRIALIER 393
             A T+  Q+ + IEV  + M +Y  I    + L++   KR+A + R
Sbjct: 175 R-AETIAGQSYRPIEVFTVVMVIYFIILFPGTRLIDALYKRVAHLGR 220



 Score = 34.3 bits (77), Expect = 3e-06
 Identities = 20/61 (32%), Positives = 35/61 (57%)

Query: 87  GLLNTLLVTFIGVILATLLGFVIGVARLSPNWMINKLATVYVEVFRNIPPLLQILFWYFA 146
           GL  TLL++ +  I A +LG  +G+ R+     +      Y++  R IP L+ ++++YFA
Sbjct: 18  GLGVTLLLSVLTAIGALVLGTALGLGRVYGAAWLRIPIVFYIDTQRAIPVLVILVWFYFA 77

Query: 147 V 147
           V
Sbjct: 78  V 78