Pairwise Alignments

Query, 487 a.a., ATP-dependent RNA helicase RhlB from Pseudomonas simiae WCS417

Subject, 626 a.a., DEAD/DEAH box helicase from Pseudomonas simiae WCS417

 Score =  276 bits (706), Expect = 1e-78
 Identities = 156/397 (39%), Positives = 229/397 (57%), Gaps = 12/397 (3%)

Query: 100 FHDFKLAPELMHAIQDLGFPYCTPIQAQVLGFTLAGKDAIGRAQTGTGKTAAFLISIITQ 159
           F    L+  L+ AI+  G+   TP+Q + +   L G+D +  AQTGTGKT  F + I+ +
Sbjct: 3   FASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILER 62

Query: 160 LLQTP-PPKERYMG--EPRALIIAPTRELVVQIAKDAADLTKYTGLNVMTFVGGMDFDKQ 216
           L     P K +  G  +PR L++ PTREL  Q+        +          GG+  + Q
Sbjct: 63  LFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMNPQ 122

Query: 217 LKHLEARHCDILVATPGRLLDFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQT 276
           ++ + +R  D+LVA PGRLLD   +G V L  VE++VLDEADRMLDMGF+  V++++ + 
Sbjct: 123 VQAM-SRGVDVLVACPGRLLDLCGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARL 181

Query: 277 PPKSERQTLLFSATFTEDVMNLAKQWTTDPSIVEIEAENVASENVEQHIYAVAGADKYKL 336
           P K  RQ LLFSATF++D+  LA +   +P  +E+   N   E +EQ ++ +A + K  L
Sbjct: 182 PAK--RQNLLFSATFSQDITALAGKLLHNPERIEVTPPNTTVERIEQRVFRLAASHKRAL 239

Query: 337 LYNLVNDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 396
           L +L+    WE+V+VF   K    R+ E L + G+ A  + G+  Q+ R K L  F+ G 
Sbjct: 240 LAHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVAIHGNKSQNARTKALADFKAGS 299

Query: 397 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGAAGVSISFAGEDDSY 456
           +R+LVATD+A RG+ ID + HV+NF LP V +DYVHRIGRTGRAG +G +IS    D+  
Sbjct: 300 VRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEK 359

Query: 457 QLPSIETLLGRKIS------CETPPTHLLRPVERKRP 487
            L SIE +  +KI+       +       +P  R+RP
Sbjct: 360 LLKSIERMTKQKIADGDLMGFDASAVEAEKPEARERP 396