Pairwise Alignments

Query, 487 a.a., ATP-dependent RNA helicase RhlB from Pseudomonas simiae WCS417

Subject, 444 a.a., DEAD/DEAH box helicase from Pseudomonas simiae WCS417

 Score =  270 bits (690), Expect = 7e-77
 Identities = 157/382 (41%), Positives = 226/382 (59%), Gaps = 9/382 (2%)

Query: 100 FHDFKLAPELMHAIQDLGFPYCTPIQAQVLGFTLAGKDAIGRAQTGTGKTAAFLISIITQ 159
           F    L   L+ A++ LG+   TP+QAQ +   LAG+D +  AQTGTGKTA F + ++ Q
Sbjct: 3   FATLGLIEPLLRALETLGYQTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFAVPLL-Q 61

Query: 160 LLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAADLTKYTGLNVMTFVGGMDFDKQLKH 219
           LL    PK       RALI+ PTREL  Q+    A+  +   L      GG+  + Q+  
Sbjct: 62  LLTMEGPKVA-ANSARALILCPTRELAEQVHASVAEYAQNLPLTTYAVYGGVSINPQMMK 120

Query: 220 LEARHCDILVATPGRLLDFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPK 279
           L  +  DILVATPGRL+D  ++  + L+ ++ +VLDEADRMLD+GF  ++  I R  P K
Sbjct: 121 LR-KGVDILVATPGRLIDLFRQNALKLNQLQTLVLDEADRMLDLGFSEELANIYRMLPKK 179

Query: 280 SERQTLLFSATFTEDVMNLAKQWTTDPSIVEIEAENVASENVEQHIYAVAGADKYKLLYN 339
             RQTLLFSATF++D+  LA Q   DP  +E+   NVA+  V+Q +  V    K +L  +
Sbjct: 180 --RQTLLFSATFSDDIRLLAGQMLNDPLSIEVSPRNVAANTVKQWVVPVDKKRKPELFVH 237

Query: 340 LVNDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRV 399
           L+    W++V+VFA  ++ V  + ++L   G+NA  + GD PQ  R + L+ F+  ++++
Sbjct: 238 LMRKGRWKQVLVFAKTRNGVDALVDKLQGLGINADGIHGDKPQATRQRALDRFKSSEVQI 297

Query: 400 LVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGAAGVSISFAGEDDSYQLP 459
           LVATDVA RG+ I+ +  V+NF LP V +DY+HRIGRTGRAG  G +IS    D+   L 
Sbjct: 298 LVATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGNTGEAISLVCADEVNMLS 357

Query: 460 SIETL----LGRKISCETPPTH 477
           +IE L    L R +  +  P H
Sbjct: 358 AIEMLTRQTLTRHMEQDFEPEH 379