Pairwise Alignments

Query, 487 a.a., ATP-dependent RNA helicase RhlB from Pseudomonas simiae WCS417

Subject, 626 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

 Score =  277 bits (709), Expect = 7e-79
 Identities = 158/397 (39%), Positives = 230/397 (57%), Gaps = 12/397 (3%)

Query: 100 FHDFKLAPELMHAIQDLGFPYCTPIQAQVLGFTLAGKDAIGRAQTGTGKTAAFLISIITQ 159
           F    L+  L+ AI+  G+   TP+Q + +   L G+D +  AQTGTGKT  F + I+ +
Sbjct: 3   FASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILER 62

Query: 160 LLQTP-PPKERYMG--EPRALIIAPTRELVVQIAKDAADLTKYTGLNVMTFVGGMDFDKQ 216
           L     P K +  G  +PR L++ PTREL  Q+        +   L      GG+  + Q
Sbjct: 63  LFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMNPQ 122

Query: 217 LKHLEARHCDILVATPGRLLDFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQT 276
           ++ + A+  D+LVA PGRLLD   +G V L  VE++VLDEADRMLDMGFI  V++++ + 
Sbjct: 123 IQAI-AKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLARL 181

Query: 277 PPKSERQTLLFSATFTEDVMNLAKQWTTDPSIVEIEAENVASENVEQHIYAVAGADKYKL 336
           P K  RQ LLFSATF++D+ +LA +   +P  +E+   N   E +EQ +Y +  + K  L
Sbjct: 182 PAK--RQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRAL 239

Query: 337 LYNLVNDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 396
           L +L+    WE+V+VF   K    R+ E L + G+ AA + G+  Q+ R K L  F+   
Sbjct: 240 LAHLITLGAWEQVLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALADFKANS 299

Query: 397 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGAAGVSISFAGEDDSY 456
           +RVLVATD+A RG+ ID + HV+NF LP V +DYVHRIGRTGRAG +G +IS    D+  
Sbjct: 300 VRVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEK 359

Query: 457 QLPSIETLLGRKIS------CETPPTHLLRPVERKRP 487
            L SIE +  ++I+       +       +P  R+RP
Sbjct: 360 LLKSIERVTKQRIADGDLMGFDASQVEAEKPEARERP 396