Pairwise Alignments

Query, 487 a.a., ATP-dependent RNA helicase RhlB from Pseudomonas simiae WCS417

Subject, 480 a.a., ATP-dependent RNA helicase RhlB from Pseudomonas putida KT2440

 Score =  775 bits (2002), Expect = 0.0
 Identities = 399/488 (81%), Positives = 425/488 (87%), Gaps = 13/488 (2%)

Query: 1   MLKALKKMFGKSEAEPLAPDSSAPAP--TAGSRNDGKQPARHA-PAAQPKKPTVTPPEQA 57
           MLKAL+K+FGK EA   AP ++APA   T  +R   K  A HA PA + ++P    P   
Sbjct: 1   MLKALRKIFGKGEA---APQAAAPAASVTPEARPAAKPAAPHANPAPKAEQPAAATP--- 54

Query: 58  KPVEPAAAPVAPKPRRERAPTPPVIPWKLEDFVVEPQEGKTRFHDFKLAPELMHAIQDLG 117
               PA  P   KPRRER P P    WK EDFVVEPQEGKTRFHDFKL+ ELMHAI DLG
Sbjct: 55  ----PADQPAKDKPRRERKPKPQASLWKPEDFVVEPQEGKTRFHDFKLSNELMHAIHDLG 110

Query: 118 FPYCTPIQAQVLGFTLAGKDAIGRAQTGTGKTAAFLISIITQLLQTPPPKERYMGEPRAL 177
           FPYCTPIQAQVLG+TL G+DAIGRAQTGTGKTAAFLISII+QL QTPPPKERYMGEPRAL
Sbjct: 111 FPYCTPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLISIISQLQQTPPPKERYMGEPRAL 170

Query: 178 IIAPTRELVVQIAKDAADLTKYTGLNVMTFVGGMDFDKQLKHLEARHCDILVATPGRLLD 237
           IIAPTRELVVQIAKDAA LTKYTGLNVM+FVGGMDFDKQLK LEARHCDILVATPGRLLD
Sbjct: 171 IIAPTRELVVQIAKDAAALTKYTGLNVMSFVGGMDFDKQLKALEARHCDILVATPGRLLD 230

Query: 238 FNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLLFSATFTEDVMN 297
           FNQRG+VHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLLFSATFT+DVMN
Sbjct: 231 FNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLLFSATFTDDVMN 290

Query: 298 LAKQWTTDPSIVEIEAENVASENVEQHIYAVAGADKYKLLYNLVNDNGWERVMVFANRKD 357
           LAKQWTT+P+IVEIE ENVASE VEQH+YAVAG+DKYKLLYNLV  N WERVMVFANRKD
Sbjct: 291 LAKQWTTNPAIVEIEPENVASETVEQHVYAVAGSDKYKLLYNLVTQNKWERVMVFANRKD 350

Query: 358 EVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISH 417
           EVRRIEE+LVRDG+NAAQLSGDVPQHKRI+TLE FREG+I VLVATDVAGRGIHIDGISH
Sbjct: 351 EVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLESFREGRITVLVATDVAGRGIHIDGISH 410

Query: 418 VINFTLPEVPDDYVHRIGRTGRAGAAGVSISFAGEDDSYQLPSIETLLGRKISCETPPTH 477
           VINFTLPE PDDYVHRIGRTGRAG +GVSISFAGEDDSYQLP+IE LLGRKI CE PP  
Sbjct: 411 VINFTLPEDPDDYVHRIGRTGRAGTSGVSISFAGEDDSYQLPAIEALLGRKIKCEMPPDE 470

Query: 478 LLRPVERK 485
           LL+PV RK
Sbjct: 471 LLKPVPRK 478