Pairwise Alignments

Query, 1589 a.a., type IV secretion protein Rhs from Pseudomonas simiae WCS417

Subject, 280 a.a., conserved protein of unknown function containing Rhs repeat-associated core domain from Pseudomonas putida KT2440

 Score = 68.6 bits (166), Expect = 9e-16
 Identities = 38/96 (39%), Positives = 49/96 (51%), Gaps = 11/96 (11%)

Query: 1247 PSEAHVRRHYTPYGDTTISLDDGKARSMADLQLPGINGQRLDVATNLYVLGSGVRAYDPR 1306
            P  A     Y+PYG  +I              + G NG R D  T  Y+LG+G RA++P 
Sbjct: 23   PGSALRHLAYSPYGYLSIFQ-----------AVLGFNGGRQDPVTGCYLLGNGRRAFNPS 71

Query: 1307 LMIFLQADPLSPFDEGGVNGYGYAACNPTNMMDPSG 1342
            LM F+  D +SPF  GG+N Y Y   +P N  DPSG
Sbjct: 72   LMRFISPDSMSPFAAGGLNSYAYCLGDPVNREDPSG 107