Pairwise Alignments

Query, 1589 a.a., type IV secretion protein Rhs from Pseudomonas simiae WCS417

Subject, 1530 a.a., putative RHS family protein from Pseudomonas putida KT2440

 Score = 76.3 bits (186), Expect = 3e-17
 Identities = 199/863 (23%), Positives = 320/863 (37%), Gaps = 156/863 (18%)

Query: 541  GNLVETRRMMGREGQWLESARTLSLVNRRLLSMTRDGGCSLDLAFDVSGRLTAETVSLGK 600
            G L+ETR  +GR  + ++  R  +L     + +T   G +    +D  G L  +   LG+
Sbjct: 653  GRLIETRDPLGRS-EHIKYLRHWALP----IQVTDTAGRTRQYGYDSHGNLLWQQDPLGR 707

Query: 601  PQQAGRRYAYHFATPEKRAHLITTDAQNNQVITYFDGVGRQVSEAQLIGTNRDQERVTRT 660
              Q    Y Y    PE R   +T   + ++ +++ +  G+ +S        RD       
Sbjct: 708  ETQ----YQYD---PEGRVTQVTDALEKSKYLSW-NTCGQLLSY-------RDCSNAQTL 752

Query: 661  WRYDALEQLSEVVKHDYLTDGQRSLKSTYSYNHWGNSSRVTRADGSVQIDEYDPLLNLRV 720
            + YDA  +L E +         R   + + Y+  G      R DG  +ID Y+       
Sbjct: 753  YHYDAHGRLRESIN-------ARGEHTHFRYDARGYLVESERPDG--RIDRYE------- 796

Query: 721  EGVEGGERLRRYFNEHNQPVK---------VERLDAGGATVEVESRTYDGLGRCLSVLDN 771
              ++   +L RY +   + ++         VER DA G +V+     YD  GR L  L N
Sbjct: 797  --IDVAGQLTRYIDPAQKTLQFRYDPSGRLVERTDAMGYSVKFR---YDAYGRLLQ-LTN 850

Query: 772  MGNKRTEFTYDAFDRLMTTLEIPLDGT-------PQRLQKTDYAPGTSDAMISALAVDGK 824
              ++   F +D  DRL+   ++   G         + ++ T          +S  A   +
Sbjct: 851  ENDESYRFGWDELDRLVAQKDLDGSGRLYAYNVLDEVIRLTHVPSPDEQPPLSDNAPPTR 910

Query: 825  CLGAR---TYDSLGRLTSQTRGTGQTTTWEYEPGWTE-PVAITSPRGHRQTLTYDKELGV 880
                R     D++GRL S+    G TT + Y+       +  T  +G +Q L        
Sbjct: 911  TTAIRHDFERDAIGRLVSKRTEDG-TTDYRYDAADNLLSITFTDNKGEKQQLD------- 962

Query: 881  PIRREMTGLPVSAYRHDATTSMLTRSETDGLIHEYFQDANGHPEKDIQTANGASLTALYS 940
                         Y +DA   +L+ + + GL+ +Y  D  G+ +  +   +   L  LY 
Sbjct: 963  -------------YTYDANGQLLSETNSAGLL-QYRYDELGNLQ-TLVLPDQRELNHLYY 1007

Query: 941  HSPGGRLLHQTAADGQ-LSTLEYDIYGRFSRITTGPMVIEQGYDTLGRPQDLTTVYEGTT 999
               G   LHQ   +G+ +S  E D        T G +V    YDT GR       Y    
Sbjct: 1008 ---GSGHLHQINLNGRVISDFERDAVHDEVLRTQGKLVTRTRYDTSGRLAGKAIHYRDAP 1064

Query: 1000 VVTKVSYDAWGREAERRFEENGVLLQVMTNTYHANSLLATRFLRDASSRVVIGETFTYDA 1059
                   D    +A R    + ++ +V+T T       A     +A+   +IG       
Sbjct: 1065 AEVLPLLD----KAYRYDASDNLIAEVLTQTQRRGMSNAAND-ENANLEQIIGR------ 1113

Query: 1060 FLRL----KTYRCEGLEQPQDHLGRGIVGQDFSLDGLNNI-----TGVVTTFVDGTQDIC 1110
            FL L    KTY            G    G D + + L  +         T   D   D  
Sbjct: 1114 FLDLPHTGKTYS-----------GHNRYGYDLN-EQLQTVHQSRPNWQATQVEDFKYDKA 1161

Query: 1111 ERFFTGADPTQLTRLTHTAPPQDVTLTYDAAGNLQAGPSG----QVYTYNAFEQLTGVH- 1165
               F G     L +       QD    YD  G L     G    Q + Y+A ++L  V  
Sbjct: 1162 GNLFDGPKLNGLIKHNRVLVYQDKRYRYDRFGRLCEKRIGSNWVQYFEYDAEQRLVCVEQ 1221

Query: 1166 ---AGSDQYSYQYD----ADSRQVVASRGDEPPVRLAYSGEGLELLVEGNKTIR----YA 1214
                  ++  + YD      S++V      EP  R+ +  +G  LL E    +     YA
Sbjct: 1222 YRSGERERVVFAYDPLGRRISKEVYQRDYPEPRRRVLFHWQGFRLLQEVQSGLASLYVYA 1281

Query: 1215 NGD--DQVMALSG--GVDGVQLYANDASGSVRGIT-APSEAHVRRHYTPYG---DTTISL 1266
              +  D +  + G  G + +  +     G    +T +      R  +  +G   +   S 
Sbjct: 1282 TVESYDPLARVDGKPGSEAIHYFHTTLVGQPEQLTDSDGNTIWRSDHHGWGKIINEWHSQ 1341

Query: 1267 DDGKARSMADLQLPGINGQRLDVATNLYVLGSGVRAYDPRLMIFLQADPLSPFDEGGVNG 1326
             +G+ +++ +       GQ +D  T L+   +  R YDP +  F   DPL    EGGVN 
Sbjct: 1342 QNGREQNLRN------QGQYIDRETGLHF--NIFRFYDPDIGRFTTTDPLG--IEGGVNL 1391

Query: 1327 YGYAACNPTNMMDPSGLWPTWLK 1349
            Y YA  N  N  DP GL P  +K
Sbjct: 1392 YSYAP-NIVNYSDPLGLCPENVK 1413