Pairwise Alignments

Query, 1589 a.a., type IV secretion protein Rhs from Pseudomonas simiae WCS417

Subject, 1290 a.a., conserved protein of unknown function from Pseudomonas putida KT2440

 Score =  333 bits (853), Expect = 1e-94
 Identities = 350/1311 (26%), Positives = 546/1311 (41%), Gaps = 168/1311 (12%)

Query: 2    NVYSNAFNFNSRLNGVVDTRTGQYVCRIALATLYP---QGPLEISREIALSFSLLNSDVS 58
            +V+SNAFNF+S +   VD RTGQY   I L  L     QGP     E+AL +S LN + S
Sbjct: 7    SVHSNAFNFSSYIESGVDPRTGQYTVSIRLPELQGNDLQGP---GFELALFYSPLNGEDS 63

Query: 59   GNYGAGWRLDNTEFDLATSKLTLLTGEQYQTHGLPSVGRTLVIKDRKLKDLVVQRV---- 114
            G +G GW L  T+  +    +TL +GE Y+  G  SV   L +K++KL+   +       
Sbjct: 64   G-FGKGWNLQLTQ--VRKHIVTLSSGETYKITGKSSVTGRLEMKEQKLRQFDLYEDPPGP 120

Query: 115  -GESTLHVIYKDGTVEILGRPSSSGPYKITAIQFEN--GERLRFSYLQGGPLE-RIQNDQ 170
             G +   V ++ G VE+L    S        ++  +  G RL  SYL  G    R+   Q
Sbjct: 121  GGAARFRVEHRSGLVEVLEVMGSGEGEVALPVELHSPLGHRLHLSYLPFGQGHMRLSEVQ 180

Query: 171  GQDLLVLTYMGALLVEADVLI------DGGRYARTRIAYGNVNNQLVRVTVPYDRTQAPE 224
             +  ++L    +     ++L       DGG  AR  +     +N++  + +P        
Sbjct: 181  DESDVLLRLQRSDNSRVELLCYPSGGDDGGPLARYAMTLSESDNRVSEIILP-----TAN 235

Query: 225  TAAYTFVYHRPFRNGLIAISEVNSPMGGNTLISYEENGHQY----ANNQYIPRVVGWRQT 280
             A + F Y      G + + E  +P GG   + Y++ GH++    A ++ +PRV      
Sbjct: 236  QARWRFTYEDVL--GYLCVRECTTPYGGVERVFYQDAGHKFPSSAARDKNLPRVTRHEID 293

Query: 281  PGGNQPPIGRKYSYSAGTNFTGYPYSGGFTP-GEENMYLIAGDYAYWAEETVIDVSNNDA 339
            P   Q     +Y Y    NF G   S  ++  G +N+Y +  DY Y  +   I      +
Sbjct: 294  PRFGQAAKVVRYEYPGTHNFIGGGSSISWSDDGLDNLYKVPEDYTY--KSIQIQEVRRQS 351

Query: 340  PLYATRMTYNKFHLLTEERVTREGTRTTTSLAYNILPGKLFPDQPPNLQLPRQVVRRFEL 399
                TR T+N+FHLLTE+  T +G +   +          F  Q P  QLP    +R+ L
Sbjct: 352  VRTITR-TFNRFHLLTEQ-ATAQGDKLLQAFTRYADNAGNFESQEPYFQLPHDETQRWSL 409

Query: 400  VAG-GNAREEVQTMETDDYGNELSRTEASGVCVERSYYPVAGEAGKCPADPHGLFQRFVK 458
            ++     REE +    D +GN L+R   + V     +Y    E      D HG F R +K
Sbjct: 410  ISNPSRQREEKRVTRYDSHGNVLTRLLPNQVLETNVWYSAEEEG-----DEHG-FVRNLK 463

Query: 459  QERL--VAAGDTPAARLTEYTHTRVPQTGNSYF----------VVQESVTQPDLF----S 502
               +   A G   AA LT+    R      SY            + ES + P  F    S
Sbjct: 464  TRTVQPAATGHGAAATLTQAFQYRALTPLGSYLKQPWRLLESETLSESGSAPGTFLEKIS 523

Query: 503  TRHTYYDTPVMLVGRLKSTSNTI------DELALTSHFTYTVAAGN--LVETRRMMGREG 554
              +          GR++  + +             +H+ Y++      L    +++G +G
Sbjct: 524  KLYQEESAERFSYGRVRQQTVSYPGVDGGSPFDTLTHYGYSLPDDERALQTVEKLVGVDG 583

Query: 555  QWLESARTLSLVNRRLLSMTRDGGCSLDLAFDVSGRLTAETVSLGKPQQAGRRYAYHF-A 613
            +        +L     L    D G  +   +D   R+T E V+ GKP +A R Y Y   A
Sbjct: 584  ESKTITLRHALDTGEPLLNLDDNGVEIRYYYDALRRVTREVVAPGKPFEAERNYKYFLCA 643

Query: 614  TPEKRAHLITTDAQNNQVITYFDGVGRQVSEAQL---IGTNRDQERVTRTWRYDALEQLS 670
               ++A     D +  +  T  DG+ R + E +      T     R     RYD L+QL 
Sbjct: 644  YDNEQAQQWAYDVKQVETHTLLDGLSRPIFEERADKDSATYAGALRPIYRARYDELDQLV 703

Query: 671  EVVKHDYLTDGQRSLKSTYSYNHWGNSSRVTRADGSVQIDEYDPLLNL------------ 718
            E  + D+L DG   L S  SY+ WG    V   DG+ Q++E D + +             
Sbjct: 704  EETEIDWLGDGLLELTSHISYDDWGQRYAVLNPDGTTQVEEIDQVASTDGPVHRAWREVE 763

Query: 719  --RVEGVEGGERLRRYFNEHNQPVKVERLDAGGAT-VEVESRTYDGLGRCLSVLDNMG-- 773
              RV G+        ++N   +PV++ER    G+T + ++   YDGLGR        G  
Sbjct: 764  HSRVSGIT-----ETWYNLFEKPVRIERFALDGSTSISLQVNDYDGLGRLSREAQGSGAG 818

Query: 774  NKRTEFTYDAFDRLMTTLEIPLDGTPQRLQKTDYAPGTSDAMISALAVDGKC----LGAR 829
             +  E+ YDAFDR+    E  L      + +T      +D  +S    + +     LG +
Sbjct: 819  QRVVEYRYDAFDRVR---EERLADRVNTVYRTYAGHSRNDLPVSIKVGNTESAAVLLGEQ 875

Query: 830  TYDSLGRLTSQTRGTGQTTTWEYEPGWTEPVAITSPRGHRQTLTYDKELGV-PIRREMTG 888
             +D L R T    G G+  T+EY+PG  +P  + +P G R    Y   LG  P+ R ++G
Sbjct: 876  VFDGLERRTVAITG-GREQTFEYDPGERQPHWVKAPDGTRIEYQYRPALGEEPVLRVLSG 934

Query: 889  LPVSAYRHDATTSMLTRSETDG--------LIHEYFQDANGHPEKDIQTANGASLTALYS 940
                 Y +D   + LT  E  G        L   +F  +NG  +++ +T +G + +  Y 
Sbjct: 935  KEAK-YEYDLKNARLTHCEEPGDDENSGYTLDRSHFL-SNGEVKRESRTVDGEAFSMTYD 992

Query: 941  HSPGGRLLHQTAADGQLSTLEYDIYGRFSRITTGP------------------MVIEQ-- 980
            +S   RL       GQ    ++D  GR  + T                     +++E   
Sbjct: 993  YSFRSRLRAYVDVLGQTQLYDFDDVGRLEKTTLHAPEPKRTRYRLQRAPARQLLLLESTF 1052

Query: 981  GYDTLGRPQDLTTVYEGT--TVVTKVSYDAWGREAERRFEENGVLLQVMTNTYHANSLLA 1038
            GYD  GR   +TT    T   + T + YD + RE  R F+  G  +Q +   Y     L 
Sbjct: 1053 GYDRQGRMASITTTDASTGHALATLLEYDEFDREILRTFDF-GDTVQTLAQDYDEFDCLK 1111

Query: 1039 TRFLRD-------ASSRVVIGETFTYDAFLRLKTYRCEGLEQPQDHLGRGIVGQDFSLDG 1091
            +R L++       + + ++  ET+ YD   RL+ Y C+G E P D  G+ I  Q F  DG
Sbjct: 1112 SRILKERPKGSDESQATLLRHETYQYDRRGRLQIYTCDGPEAPVDPSGQTIARQIFGFDG 1171

Query: 1092 LNNITGVVTTFVDGTQDICERFFTGADPTQLTR----------------------LTHTA 1129
            L+NI  V+T   DG+       F  +DP Q++R                      +    
Sbjct: 1172 LDNILSVITYRPDGSWQRTLYEFKNSDPAQMSRIIPPDALLETYDVDHDLEELFKIVKYD 1231

Query: 1130 PPQDVTLTYDAAGNLQAGPSGQVYTYNAFEQLTGVHA-GSDQYSYQYDADS 1179
            P   + L YD  GNL +   G+V TY+   +L  V     ++  Y YD ++
Sbjct: 1232 PQLAIDLHYDGNGNLISDEQGRVLTYDGLNRLLRVETPDGERCRYNYDPEN 1282