Pairwise Alignments
Query, 1589 a.a., type IV secretion protein Rhs from Pseudomonas simiae WCS417
Subject, 1632 a.a., conserved membrane protein of unknown function from Pseudomonas putida KT2440
Score = 373 bits (957), Expect = e-106
Identities = 414/1531 (27%), Positives = 646/1531 (42%), Gaps = 172/1531 (11%)
Query: 2 NVYSNAFNFNSRLNGVVDTRTGQYVCRIALATL---YPQGPLEISREIALSFSLLNSDVS 58
+++SNA NF S + VD+RTGQY I L L Y GP E++L+F+ LN S
Sbjct: 6 SLHSNALNFMSFMESGVDSRTGQYTLSIKLPELGANYFSGP---ELELSLNFNPLNMIDS 62
Query: 59 GNYGAGWRLDNTEFDLATSKLTLLTGEQYQTHGLPSVGRTLVIKDRKLKDLVVQRV---- 114
G +G GW L T+F T +T +GE ++ G S G L +++++L R
Sbjct: 63 G-WGRGWNLSLTQFAPHTQVITTYSGESFKVTG--SSGSRLQMQEQRLAHFHFYREPAGP 119
Query: 115 -GESTLHVIYKDGTVEILGRPSSSG-----PYKITAIQFENGERLRFSYLQGGP----LE 164
G + V+++ G VEIL S+ P +I A G R+ Y L
Sbjct: 120 GGNARYRVVHRSGLVEILEEMGSANGRIALPVEIYAA---TGHRIDLQYQPFNSSYMMLS 176
Query: 165 RIQNDQGQDLLVLTYMGALLVEADVLIDGGRYARTRIAYGNVNNQ--LVRVTVPYDRTQA 222
I +++ + LL + + + + G + N+ N + + +P
Sbjct: 177 SISDEREEILLEIERDDSRIELRERPYQGDNGQPVALYAMNLINTDWVTSIVLP-----T 231
Query: 223 PETAAYTFVYHRPFRNGLIAISEVNSPMGGNTLISYEENGHQYANNQY--IPRVVGWRQT 280
E A++ Y NGL+ +S+V P G + Y++ GH + + +PRV
Sbjct: 232 HELASWRLEY--ALVNGLLCVSKVEPPTGAREYLYYQDRGHLFPGDARPPLPRVTRHVIE 289
Query: 281 PGGNQPPIGRKYSYSAGTNFTGYPYSGGFTP-GEENMYLIAG-DYAYWAEETVIDVSNND 338
P G QP R Y+Y NF GY G++ G +N+Y DY Y ET+ D +
Sbjct: 290 PRGGQPAFQRTYTYPGLNNFLGYGAGIGWSDNGLDNLYESKRYDYEYQTVETLRD--EDG 347
Query: 339 APLYATRMTYNKFHLLTEERVTREGTRTTTSLAYNILPGKLFPDQPPNLQLPRQVVRRFE 398
L T+N+FHLLT R + ++ YNI F Q LQ+P + R+
Sbjct: 348 TALRDITRTFNRFHLLTSTRTVQNNCVHEVTMQYNIKDVP-FNQQVSTLQMPIREQTRWS 406
Query: 399 LVAGGNAREEVQTMET--DDYGNELSRTEASGVCVERSYYPVAGEAGKCPADPHGLFQRF 456
L A R ++T+ET D GN + R A+GV + +Y E P D +G F R
Sbjct: 407 L-ADNITRSRLETVETTYDTSGNIIWRKLANGVTETQEWYGTQAE-DDYPGDANG-FVRH 463
Query: 457 VKQERLVAA--GDTPAARLTEYTHTRV--PQTGNSY----FVVQESVTQPDLFSTRHT-- 506
+K + A G A LT++ + P GN+ +V+ S T H
Sbjct: 464 LKSKTTTPASSGRGQAPVLTQHYRYKALAPLAGNAITLNPMIVEHSETLTHAHDPAHPLE 523
Query: 507 -----YYDTPVMLV--GRLKSTSNTIDELALTSHFTYT-----VAAGNLVETRR-MMGRE 553
Y D P + GR ++L T+ + + + ++ETR+ + G +
Sbjct: 524 EKIYYYLDAPKSSLRHGRRYQEVVKRNKLETTTQYQFNSLLDPLGGHQVLETRKTLFGYD 583
Query: 554 GQWLESARTLSLVNRRLLSMTRDGGCSLDLAFDVSGRLTAETVSLGKPQQAGRRYAYHF- 612
G + + SL++ L + G A+D R+T E VS P +A +RY Y
Sbjct: 584 GAQRSTVQRRSLLHGEKLYELNENGVHTQWAYDALRRVTEERVSPETPFEAKKRYDYQLC 643
Query: 613 ATPEKRAHLITTDAQNNQVITYFDGVGRQVSEAQ--LIGTNRDQERVTRTWRYDALEQLS 670
A+ A T+A+ T DG+GR E++ ++ +YDA
Sbjct: 644 ASDADIARARVTNARGITTETELDGLGRPTRESRDNVLEARPGAFYEILAIQYDAYGNRI 703
Query: 671 EVVKHDYLTDGQR-SLKSTYSYNHWGNSSRVTRADGSVQIDEYDPLLNLRVEGV------ 723
+ D+L Q L + Y+ WG D Q + DP+ N +G
Sbjct: 704 QESVTDWLQAQQYLHLVTKTRYDDWGEQCCTIGPDDVEQHNVLDPIGNADHQGAIRYSWR 763
Query: 724 EGGERLRR--------------------------YFNEHNQPVKVERLDAGGATVEVESR 757
EGG R + N N+PV +RLDA G +
Sbjct: 764 EGGRLKSRPQVQNRNGMNVRSTRQARAISGKTETWLNLFNKPVLRKRLDALGELIGERRY 823
Query: 758 TYDGLGRCLSVLDNMGNKRTEFTYDAFDRLMTTLEIPLDGTPQRLQKTDYAPGTSDAMIS 817
+YDGLGR L+ D N T F+YDA+ R++TT + + L YA +++ + +
Sbjct: 824 SYDGLGRTLTETDER-NHTTAFSYDAWGRMLTT-----EQPNKTLLTRTYAEHSAEDLPT 877
Query: 818 ALAVD-------GKCLGARTYDSLGRLTSQTRGTGQTTTWEYEPGWTEPVAITSPRGHRQ 870
L V + +GA+ +D L RL T G +T + + G + P +P G +
Sbjct: 878 RLVVTPANVQLPARQIGAQYFDGLDRLIGTTTGD-RTEYFLFRDGESIPRQRINPAG--E 934
Query: 871 TLTYDKELGVPIRREMTGLPVS--------AYRHDATTSMLTRSETDGLIHEY-FQDANG 921
T+ D L ++T P+S ++ +D ++ L + + + AN
Sbjct: 935 TIEQDYNL------QLTNEPISNTAPEEHASFAYDPVSARLLSDDNRQCARRFEYNKANQ 988
Query: 922 HPEKDIQTA-NGASLTALYSHSPGGRLLHQTAADGQLSTLEYDIYGRFSRITTGPMVIEQ 980
+ + +G + + ++S + RL + G+ +T EYD GR G + E
Sbjct: 989 LTAEHWEDKRDGKTWSRIHSSTLQDRLKNTHEPYGEDTTHEYDAQGRLVSTLQGQLQAEF 1048
Query: 981 GYDTLGRPQDLTTVYEGTT--VVTKVSYDAWGREAERRFEENGVLLQVMTNTYHANSLLA 1038
YD LGR + +T+ + + TK+ YD RE +R + + G + + + LL
Sbjct: 1049 KYDDLGRIELITSHDRASAQALETKIEYDDQDREVKRTWRQPGQPERTQETVWDKDDLLL 1108
Query: 1039 TRFLRDAS-SRVVIGETFTYDAFLRLKTYRCEGLEQPQDHLGRGIVGQDFSLDGLNNITG 1097
+R L+ SR+V E F YD+ RL Y C G +QP+D LGR I Q F+ D NNI
Sbjct: 1109 SRTLQVGGVSRLV--EKFGYDSHARLNMYNCTGPDQPRDALGRSIAMQVFNFDAYNNIEL 1166
Query: 1098 VVTTFVDGTQDICERFFTGA-DPTQLTRLTHTAP--PQDVTLTYDAAGNLQAGPSGQVYT 1154
VT+F G F DP QL R+ +T P + +YDA GNL +
Sbjct: 1167 TVTSFTGGPAAERATFIHAERDPCQLQRIEYTPPRTAPNPEFSYDANGNLTRDEQARPIR 1226
Query: 1155 YNAFEQLTGVHAGSDQYSYQYDADSRQVVASRGDEPPVRLAYSGEGLELLVEGNKTIRYA 1214
Y++ +L G++ +Y YDA V E + L + G+ L + V + Y
Sbjct: 1227 YDSQNRLLGLNDSGAPDTYGYDAGGLLVSRPEAGERTL-LLHDGQRLRMAVRDSLQTLYL 1285
Query: 1215 NGDDQVMALSGGVDGVQLYANDASGSVRGITAPSEAHVRR--HYTPYGDTTISLDDGKAR 1272
+ D+Q + G Q + + + A S+A R YT YG+ DD
Sbjct: 1286 HHDEQALGQQQKGTGAQSPLLLHTSASHSVIAESQAGSTRAVRYTAYGER--HADDPLLG 1343
Query: 1273 SMADLQLPGINGQRLDVATNLYVLGSGVRAYDPRLMIFLQADPLSPFDEGGVNGYGYAAC 1332
++ G NG+ LD + Y+LGSG RAY+P LM F D LSPF GG+N YGY
Sbjct: 1344 TL------GYNGEALDPDSGWYLLGSGYRAYNPVLMRFHSPDALSPFGAGGLNYYGYCQG 1397
Query: 1333 NPTNMMDPSGLWPTWLKW------------AFTGAAL-AFGVVTLGAGL--AGIAAAGLA 1377
NP DP+G + + G AL A G +G G+ A +A+
Sbjct: 1398 NPITFRDPTGHYSIGYSGQSRSLADLNSYSIWRGKALGAIGWTGIGLGILFAAVASVAAV 1457
Query: 1378 VVTSAQIVAVVGATMGVIGNILGVTALSIEA 1408
VVT + A G + ++ A
Sbjct: 1458 VVTGGVAAPAIAAAWAAAGGGISGAGAALSA 1488